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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780474 (104 seq.)
>W1710881450
LMTB01000097
Actinomycetota
Dietzia timorensis [LMTB]
30692
30619
-
Gly
CCC
[ENA]
¡û
>W1710935844
LOKT01000013
Actinomycetota
Nocardia donostiensis [LOKT]
143780
143707
-
Gly
CCC
[ENA]
¡û
>W1711003313
LQGY01000055
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
90018
90089
+
Gly
CCC
[ENA]
¡û
>W1711050386
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
430161
430232
+
Gly
CCC
[ENA]
¡û
>W131099125
AOSR01000068
Actinomycetota
Dietzia sp. UCD-THP [AOSR]
18709
18638
-
Gly
CCC
[ENA]
¡û
>W1711081648
LSSV01000082
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
142561
142634
+
Gly
CCC
[ENA]
¡û
>W1711082317
LSTT01000364
Actinomycetota
Dietzia cinnamea [LSTT]
329822
329895
+
Gly
CCC
[ENA]
¡û
>W1711139735
LVFF01000030
Actinomycetota
Dietzia maris [LVFF]
24690
24617
-
Gly
CCC
[ENA]
¡û
>W1711187603
LWPP01000428
Actinomycetota
Dietzia sp. HMSC21D01 [LWPP]
693
766
+
Gly
CCC
[ENA]
¡û
>W1711351231
MDCG01000210
Actinomycetota
Dietzia alimentaria [MDCG]
18984
18911
-
Gly
CCC
[ENA]
¡û
>W1711739064
MUBO01000055
Actinomycetota
Streptomyces daghestanicus [MUBO]
20101
20174
+
Gly
CCC
[ENA]
¡û
>W1711747317
MUKP01000014
Actinomycetota
Nocardia donostiensis [MUKP]
25470
25543
+
Gly
CCC
[ENA]
¡û
>W1711750396
MUMY01000004
Actinomycetota
Nocardia donostiensis [MUMY]
25494
25567
+
Gly
CCC
[ENA]
¡û
>PL171001816
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
980856
980783
-
Gly
CCC
[ENA]
¡û
>C171044553
CP015961
Actinomycetota
Dietzia timorensis ID05-A0528 [CP015961]
3162325
3162398
+
Gly
CCC
-
¡û
>C171072543
CP018082
Actinomycetota
Nocardia mangyaensis Y48 [CP018082]
6965123
6965196
+
Gly
CCC
-
¡û
>C014832
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
5750532
5750605
+
Gly
CCC
[Ensembl]
¡û
>WENV180031993
FTJU01003247
[FTJU] metagenome; soil
1732
1803
+
Gly
CCC
[ENA]
¢þ
>WENV181170009
OEIV010019401
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1229
1302
+
Gly
CCC
[ENA]
¢þ
>W141231448
BAUA01000186
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
726
655
-
Gly
CCC
[ENA]
¡û
>WENV170973363
MTKY01032465
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
193
266
+
Gly
CCC
[ENA]
¢þ
>C181017355
CP015449
Actinomycetota
Dietzia lutea YIM 80766 [CP015449]
3210426
3210499
+
Gly
CCC
-
¡û
>C181057488
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
6922873
6922802
-
Gly
CCC
-
¡û
>C181107056
CP024869
Actinomycetota
Dietzia sp. JS16-p6b [CP024869]
3155629
3155700
+
Gly
CCC
-
¡û
>C181139073
CP026746
Actinomycetota
Nocardia cyriacigeorgica MDA3349 [CP026746]
2007604
2007675
+
Gly
CCC
-
¡û
>C181148301
CP027238
Actinomycetota
Dietzia sp. oral taxon 368 W5195 [CP027238]
813543
813616
+
Gly
CCC
-
¡û
>C181200307
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3954492
3954419
-
Gly
CCC
-
¡û
>C191065458
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
4261569
4261640
+
Gly
CCC
-
¡û
>C191130423
CP034753
Actinomycetota
Agromyces sp. LHK192 [CP034753]
3987487
3987559
+
Gly
CCC
-
¡û
>C191208349
LR134352
Actinomycetota
Nocardia asteroides NCTC11293 [LR134352]
438650
438721
+
Gly
CCC
-
¡û
>C191219099
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
4433667
4433596
-
Gly
CCC
-
¡û
>W141769060
JOFP01000002
Actinomycetota
Pilimelia anulata [JOFP]
1327139
1327212
+
Gly
CCC
[ENA]
¡û
>W1911422410
NXEG01000003
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
1400
1327
-
Gly
CCC
[ENA]
¡û
>W1911422510
NXEH01000048
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
1400
1327
-
Gly
CCC
[ENA]
¡û
>W1911422545
NXEI01000001
Actinomycetota
Dietzia sp. WMMA184 [NXEI]
2926570
2926498
-
Gly
CCC
[ENA]
¡û
>W1911493028
OBEG01000004
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
701323
701251
-
Gly
CCC
[ENA]
¡û
>W1911532645
OIFR01000001
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
37037
37108
+
Gly
CCC
[ENA]
¡û
>W1911573008
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
4459207
4459280
+
Gly
CCC
[ENA]
¡û
>W1911814634
QZFU01000016
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
616548
616621
+
Gly
CCC
[ENA]
¡û
>W1810282651
PSZF01000007
Actinomycetota
Nocardia cyriacigeorgica MDA3732 [PSZF]
161661
161732
+
Gly
CCC
[ENA]
¡û
>W1810532490
QCYJ01000005
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
652203
652131
-
Gly
CCC
[ENA]
¡û
>W1810608600
QGTL01000004
Actinomycetota
Nocardia neocaledoniensis DSM 44717 [QGTL]
90934
91005
+
Gly
CCC
[ENA]
¡û
>W1810659625
QJKF01000004
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
405675
405748
+
Gly
CCC
[ENA]
¡û
>W1810720298
QNRE01000010
Actinomycetota
Nocardia puris DSM 44599 [QNRE]
238139
238066
-
Gly
CCC
[ENA]
¡û
>W1810722014
QNTT01000033
Actinomycetota
Dietzia maris SST1 [QNTT]
32085
32013
-
Gly
CCC
[ENA]
¡û
>W1511221566
JNFP01000016
Actinomycetota
Nocardia vulneris W9851 [JNFP]
690
619
-
Gly
CCC
[ENA]
¡û
>W11139547
AEKG01000406
Actinomycetota
Dietzia cinnamea P4 [AEKG]
11544
11471
-
Gly
CCC
[ENA]
¡û
>W11178765
AGFF01000014
Actinomycetota
Dietzia alimentaria 72 [AGFF]
3606
3535
-
Gly
CCC
[ENA]
¡û
>W121055511
AIHV01000003
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
357139
357068
-
Gly
CCC
[ENA]
¡û
>W121124860
BAFO01000034
Actinomycetota
Nocardia asteroides NBRC 15531 [BAFO]
47416
47489
+
Gly
CCC
[ENA]
¡û
>W121124908
BAFP01000142
Actinomycetota
Nocardia abscessus NBRC 100374 [BAFP]
24358
24431
+
Gly
CCC
[ENA]
¡û
>W121125003
BAFR01000212
Actinomycetota
Nocardia araoensis NBRC 100135 [BAFR]
17688
17761
+
Gly
CCC
[ENA]
¡û
>W121125053
BAFS01000284
Actinomycetota
Nocardia asiatica NBRC 100129 [BAFS]
4083
4156
+
Gly
CCC
[ENA]
¡û
>W121125097
BAFT01000088
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
80782
80853
+
Gly
CCC
[ENA]
¡û
>W121125361
BAFY01000242
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
15789
15716
-
Gly
CCC
[ENA]
¡û
>W121125408
BAFZ01000119
Actinomycetota
Nocardia exalbida NBRC 100660 [BAFZ]
257078
257151
+
Gly
CCC
[ENA]
¡û
>W121125458
BAGA01000139
Actinomycetota
Nocardia higoensis NBRC 100133 [BAGA]
73792
73865
+
Gly
CCC
[ENA]
¡û
>W121125726
BAGF01000084
Actinomycetota
Nocardia pneumoniae NBRC 100136 [BAGF]
31977
32050
+
Gly
CCC
[ENA]
¡û
>W121125778
BAGG01000123
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
56435
56509
+
Gly
CCC
[ENA]
¡û
>W121125827
BAGH01000400
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
45902
45975
+
Gly
CCC
[ENA]
¡û
>W121126138
BAGN01000203
Actinomycetota
Nocardia vinacea NBRC 16497 [BAGN]
6435
6506
+
Gly
CCC
[ENA]
¡û
>W1610069395
BCSL01000012
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
30761
30688
-
Gly
CCC
[ENA]
¡û
>W1610069910
BCSW01000021
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
43974
44047
+
Gly
CCC
[ENA]
¡û
>W1610078298
BDAU01000024
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
14222
14149
-
Gly
CCC
[ENA]
¡û
>W1610078515
BDAY01000030
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
107358
107285
-
Gly
CCC
[ENA]
¡û
>W1610078592
BDAZ01000065
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40018
40091
+
Gly
CCC
[ENA]
¡û
>W1610078633
BDBA01000177
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
14446
14519
+
Gly
CCC
[ENA]
¡û
>W1610078686
BDBB01000040
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
38302
38229
-
Gly
CCC
[ENA]
¡û
>W1610078705
BDBC01000007
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
167340
167267
-
Gly
CCC
[ENA]
¡û
>W1610079080
BDBJ01000092
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
23708
23781
+
Gly
CCC
[ENA]
¡û
>W1610079246
BDBM01000023
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
15624
15697
+
Gly
CCC
[ENA]
¡û
>W1610079367
BDBP01000020
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
92643
92570
-
Gly
CCC
[ENA]
¡û
>W1610079565
BDBT01000001
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
238208
238281
+
Gly
CCC
[ENA]
¡û
>W1610079739
BDBW01000009
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
152533
152606
+
Gly
CCC
[ENA]
¡û
>W1610079875
BDBY01000336
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
23909
23838
-
Gly
CCC
[ENA]
¡û
>W1610080246
BDCF01000016
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147259
147186
-
Gly
CCC
[ENA]
¡û
>W1610080390
BDCI01000007
Actinomycetota
Nocardia vulneris [BDCI]
30295
30366
+
Gly
CCC
[ENA]
¡û
>W1610080486
BDCK01000002
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
126265
126338
+
Gly
CCC
[ENA]
¡û
>C131008851
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
9067008
9067079
+
Gly
CCC
[Ensembl]
¡û
>W1610743796
LMTB01000097
Actinomycetota
Dietzia timorensis [LMTB]
30692
30619
-
Gly
CCC
[ENA]
¡û
>W1610853878
LQGY01000055
Actinomycetota
Agromyces sp. NDB4Y10 [LQGY]
90018
90089
+
Gly
CCC
[ENA]
¡û
>W1610891515
LRRM01000004
Actinomycetota
Nocardia brasiliensis [LRRM]
430161
430232
+
Gly
CCC
[ENA]
¡û
>W1610920483
LSSV01000082
Actinomycetota
Dietzia sp. 111N12-1 [LSSV]
142561
142634
+
Gly
CCC
[ENA]
¡û
>W1610921102
LSTT01000364
Actinomycetota
Dietzia cinnamea [LSTT]
329822
329895
+
Gly
CCC
[ENA]
¡û
>W1610950743
LVFF01000030
Actinomycetota
Dietzia maris [LVFF]
24690
24617
-
Gly
CCC
[ENA]
¡û
>W1710066768
BCSL01000012
Actinomycetota
Dietzia papillomatosis NBRC 105045 [BCSL]
30761
30688
-
Gly
CCC
[ENA]
¡û
>W1710067283
BCSW01000021
Actinomycetota
Dietzia cinnamea NBRC 102147 [BCSW]
43974
44047
+
Gly
CCC
[ENA]
¡û
>W1710076857
BDAU01000024
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
14222
14149
-
Gly
CCC
[ENA]
¡û
>W1710077074
BDAY01000030
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
107358
107285
-
Gly
CCC
[ENA]
¡û
>W1710077151
BDAZ01000065
Actinomycetota
Nocardia anaemiae NBRC 100462 [BDAZ]
40018
40091
+
Gly
CCC
[ENA]
¡û
>W1710077192
BDBA01000177
Actinomycetota
Nocardia amamiensis NBRC 102102 [BDBA]
14446
14519
+
Gly
CCC
[ENA]
¡û
>W1710077245
BDBB01000040
Actinomycetota
Nocardia arthritidis NBRC 100137 [BDBB]
38302
38229
-
Gly
CCC
[ENA]
¡û
>W1710077264
BDBC01000007
Actinomycetota
Nocardia beijingensis NBRC 16342 [BDBC]
167340
167267
-
Gly
CCC
[ENA]
¡û
>W1710077639
BDBJ01000092
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
23708
23781
+
Gly
CCC
[ENA]
¡û
>W1710077805
BDBM01000023
Actinomycetota
Nocardia gamkensis NBRC 108242 [BDBM]
15624
15697
+
Gly
CCC
[ENA]
¡û
>W1710077926
BDBP01000020
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
92643
92570
-
Gly
CCC
[ENA]
¡û
>W1710078124
BDBT01000001
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
238208
238281
+
Gly
CCC
[ENA]
¡û
>W1710078298
BDBW01000009
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
152533
152606
+
Gly
CCC
[ENA]
¡û
>W1710078434
BDBY01000336
Actinomycetota
Nocardia pseudovaccinii NBRC 100343 [BDBY]
23909
23838
-
Gly
CCC
[ENA]
¡û
>W1710078805
BDCF01000016
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
147259
147186
-
Gly
CCC
[ENA]
¡û
>W1710078949
BDCI01000007
Actinomycetota
Nocardia vulneris [BDCI]
30295
30366
+
Gly
CCC
[ENA]
¡û
>W1710079045
BDCK01000002
Actinomycetota
Nocardia niwae NBRC 108934 = DSM 45340 [BDCK]
126265
126338
+
Gly
CCC
[ENA]
¡û
>W1710568851
FOTX01000001
Actinomycetota
Nocardia asteroides [FOTX]
692970
692897
-
Gly
CCC
[ENA]
¡û
>W1710599652
FTOW01000003
Actinomycetota
Nocardia farcinica [FTOW]
585994
585921
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK