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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780642 (11 seq.)
>WENV180055652
MPLV02173644
[MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter
88
14
-
Arg
CCT
[ENA]
¡û
>WENV180069392
MPLZ02105657
[MPLZ] marine metagenome; 160 m water sample filtered on 0.2 um supor filter
2238
2312
+
Arg
CCT
[ENA]
¡û
>WENV180074574
MPMA02152577
[MPMA] marine metagenome; 180 m water sample filtered on 0.2 um supor filter
2244
2318
+
Arg
CCT
[ENA]
¡û
>WENV180077903
MPMB02074542
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
1742
1668
-
Arg
CCT
[ENA]
¡û
>WENV180087274
MPME02072674
[MPME] marine metagenome; 150 m water sample filtered on 30 um supor filter
762
836
+
Arg
CCT
[ENA]
¡û
>WENV180089581
MPMF02091518
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
52
123
+
Arg
CCT
[ENA]
¡û
>WENV183794748
PVBE010119483
[PVBE] marine metagenome; water
44
115
+
Arg
CCT
[ENA]
¡û
>WENV183810374
PVBE011477435
[PVBE] marine metagenome; water
77
151
+
Arg
CCT
[ENA]
¡û
>WENV170322038
CESR01103369
[CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
794
865
+
Arg
CCT
[ENA]
¡û
>WENV170355215
CETI01223539
[CETI] marine metagenome genome assembly TARA_111_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
404
333
-
Arg
CCT
[ENA]
¡û
>WENV170469428
CEVF01114313
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
304
233
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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