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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780754 (42 seq.)
>W1711078557
LSMZ01000062
Bacillota
Clostridium sp. link-BC1 [LSMZ]
133160
133087
-
Gly
TCC
[ENA]
¡û
>W1711078558
LSMZ01000062
Bacillota
Clostridium sp. link-BC1 [LSMZ]
2374
2301
-
Gly
TCC
[ENA]
¡û
>W1711222557
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1736915
1736842
-
Gly
TCC
[ENA]
¡û
>W1711222558
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
1606134
1606061
-
Gly
TCC
[ENA]
¡û
>C007106
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
141048
141121
+
Gly
TCC
[Ensembl]
¡û
>C007107
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
234188
234261
+
Gly
TCC
[Ensembl]
¡û
>W08011372
ABVG01000001
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
249237
249310
+
Gly
TCC
[ENA]
¡û
>W08011378
ABVG01000004
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
46547
46620
+
Gly
TCC
[ENA]
¡û
>WENV181412269
OGCI01110256
[OGCI] hot springs metagenome; Hot spring water
49
122
+
Gly
TCC
[ENA]
¢þ
>W141233355
BAVR01000003
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
82799
82726
-
Gly
TCC
[ENA]
¡û
>W141251461
CBQO010000007
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
77339
77412
+
Gly
TCC
[ENA]
¡û
>W141251462
CBQO010000010
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
108
181
+
Gly
TCC
[ENA]
¡û
>WENV170684070
LFRM01017969
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
8856
8783
-
Gly
TCC
[ENA]
¢þ
>WENV170687655
LFRM01204392
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
131360
131433
+
Gly
TCC
[ENA]
¢þ
>WENV170721034
LSQX01176737
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7215
7288
+
Gly
TCC
[ENA]
¢þ
>WENV170724882
LSQX01321851
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4864
4937
+
Gly
TCC
[ENA]
¢þ
>WENV170970318
MTKW01062609
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1003
1076
+
Gly
TCC
[ENA]
¢þ
>W09100430
AABG04000001
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
255531
255458
-
Gly
TCC
[ENA]
¡û
>W09100436
AABG04000003
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
38455
38382
-
Gly
TCC
[ENA]
¡û
>W09100485
AABG04000141
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
491
418
-
Gly
TCC
[ENA]
¡û
>W09135663
ACVX01000017
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
31959
32032
+
Gly
TCC
[ENA]
¡û
>W09135666
ACVX01000019
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
45063
45136
+
Gly
TCC
[ENA]
¡û
>W1911496628
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1530125
1530198
+
Gly
TCC
[ENA]
¡û
>W1911496629
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
1617352
1617425
+
Gly
TCC
[ENA]
¡û
>W1911572340
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2500607
2500534
-
Gly
TCC
[ENA]
¡û
>W1911572341
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
2413380
2413307
-
Gly
TCC
[ENA]
¡û
>C11106492
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2495066
2494993
-
Gly
TCC
[Ensembl]
¡û
>C11106493
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
2407839
2407766
-
Gly
TCC
[Ensembl]
¡û
>C161060801
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2500607
2500534
-
Gly
TCC
-
¡û
>C161060802
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
2413380
2413307
-
Gly
TCC
-
¡û
>C161097553
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2499918
2499845
-
Gly
TCC
-
¡û
>C161097554
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
2412691
2412618
-
Gly
TCC
-
¡û
>W121061306
AJGS01000048
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
31964
32037
+
Gly
TCC
[ENA]
¡û
>W121061310
AJGS01000062
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
45091
45164
+
Gly
TCC
[ENA]
¡û
>W121061359
AJGT01000029
Bacillota
Acetivibrio thermocellus YS [AJGT]
37793
37720
-
Gly
TCC
[ENA]
¡û
>W121061363
AJGT01000030
Bacillota
Acetivibrio thermocellus YS [AJGT]
41428
41355
-
Gly
TCC
[ENA]
¡û
>W1610605572
LFSC01000003
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
8856
8783
-
Gly
TCC
[ENA]
¡û
>W1610605605
LFSC01000036
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
131360
131433
+
Gly
TCC
[ENA]
¡û
>W1710531340
FNPL01000020
Bacillota
Thermoactinomyces sp. DSM 45892 [FNPL]
37127
37200
+
Gly
TCC
[ENA]
¡û
>W1710581262
FPJZ01000019
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
16724
16651
-
Gly
TCC
[ENA]
¡û
>W1710726859
LFSC01000003
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
8856
8783
-
Gly
TCC
[ENA]
¡û
>W1710726892
LFSC01000036
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
131360
131433
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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