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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780766 (7 seq.)
>WENV180058204
MPLX02041163
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
697
768
+
Gly
TCC
[ENA]
¡û
>WENV183804264
PVBE010914284
[PVBE] marine metagenome; water
141106
141035
-
Gly
TCC
[ENA]
¡û
>WENV170363129
CETM01128882
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
661
732
+
Gly
TCC
[ENA]
¡û
>WENV170610264
FUWD011800747
[FUWD] metagenome; unknown
57
128
+
Gly
TCC
[ENA]
¡û
>WENV170787043
MDSV01012131
[MDSV] marine metagenome; seawater
520
591
+
Gly
TCC
[ENA]
¡û
>WENV170841507
MDSZ01223648
[MDSZ] marine metagenome; seawater
185
256
+
Gly
TCC
[ENA]
¡û
>WENV170907472
MDTE01052353
[MDTE] marine metagenome; seawater
3873
3944
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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