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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.780782 (14 seq.)
>C171094271
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
494779
494849
+
Gly
TCC
-
¡û
>C171094278
CP019433
Bacillota
Jeotgalibaca sp. PTS2502 [CP019433]
495507
495577
+
Gly
TCC
-
¡û
>WENV170644587
JMBW01035204
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
141
211
+
Gly
TCC
[ENA]
¢þ
>C191126018
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2864932
2864862
-
Gly
TCC
-
¡û
>C191126025
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
2864205
2864135
-
Gly
TCC
-
¡û
>C191126045
CP034465
Bacillota
Jeotgalibaca ciconiae H21T32 [CP034465]
1272028
1271958
-
Gly
TCC
-
¡û
>W121009339
AGEG01000013
Bacillota
Facklamia languida CCUG 37842 [AGEG]
188444
188514
+
Gly
TCC
[ENA]
¡û
>W121009346
AGEG01000013
Bacillota
Facklamia languida CCUG 37842 [AGEG]
189127
189197
+
Gly
TCC
[ENA]
¡û
>W121009347
AGEG01000014
Bacillota
Facklamia languida CCUG 37842 [AGEG]
23
93
+
Gly
TCC
[ENA]
¡û
>W1710516205
FNCK01000011
Bacillota
Facklamia miroungae [FNCK]
45668
45598
-
Gly
TCC
[ENA]
¡û
>W1710549453
FOEN01000001
Bacillota
Ignavigranum ruoffiae [FOEN]
456706
456636
-
Gly
TCC
[ENA]
¡û
>W1710549459
FOEN01000001
Bacillota
Ignavigranum ruoffiae [FOEN]
456033
455963
-
Gly
TCC
[ENA]
¡û
>W1710582720
FQUF01000011
Bacillota
Atopostipes suicloacalis DSM 15692 [FQUF]
60479
60549
+
Gly
TCC
[ENA]
¡û
>W1710582750
FQUF01000030
Bacillota
Atopostipes suicloacalis DSM 15692 [FQUF]
27416
27346
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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