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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781219 (58 seq.)
>W1710777904
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1149854
1149781
-
Cys
GCA
[ENA]
¡û
>W1710892059
LNDJ01000052
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
33585
33658
+
Cys
GCA
[ENA]
¡û
>W1710915858
LNUO01000180
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3519
3446
-
Cys
GCA
[ENA]
¡û
>W1711179238
LWHM01000034
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
11037
10964
-
Cys
GCA
[ENA]
¡û
>W1711179274
LWHN01000037
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
11037
10964
-
Cys
GCA
[ENA]
¡û
>W1711303092
MAJM01000001
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
732940
733013
+
Cys
GCA
[ENA]
¡û
>W1711425133
MIEQ01000046
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
123531
123604
+
Cys
GCA
[ENA]
¡û
>W1711425136
MIEQ01000046
Gammaproteobacteria
Motiliproteus sp. MSK22-1 [MIEQ]
123843
123916
+
Cys
GCA
[ENA]
¡û
>W1711682904
MRYA01000002
Gammaproteobacteria
Psychrobacter sp. Cmf 22.2 [MRYA]
16732
16659
-
Cys
GCA
[ENA]
¡û
>W1711682955
MRYB01000006
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
97626
97699
+
Cys
GCA
[ENA]
¡û
>W1711683004
MRYC01000010
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
135378
135305
-
Cys
GCA
[ENA]
¡û
>C171019155
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
20699
20626
-
Cys
GCA
-
¡û
>WENV180101017
OAOU01000001
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
292206
292279
+
Cys
GCA
[ENA]
¢þ
>W141086190
AUSW01000034
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
294427
294500
+
Cys
GCA
[ENA]
¡û
>WENV181321711
OFKN01001384
[OFKN] marine metagenome; seawater
168
95
-
Cys
GCA
[ENA]
¢þ
>W141199933
AYXM01000016
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
55332
55405
+
Cys
GCA
[ENA]
¡û
>W141200518
AYXZ01000106
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
45989
46062
+
Cys
GCA
[ENA]
¡û
>W141200561
AYYA01000032
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
55333
55406
+
Cys
GCA
[ENA]
¡û
>W141233974
BAWG01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
187365
187292
-
Cys
GCA
[ENA]
¡û
>W141233995
BAWH01000001
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
200955
200882
-
Cys
GCA
[ENA]
¡û
>WENV182549775
OJBZ01000009
[OJBZ] seawater metagenome; Sea water
28952
29025
+
Cys
GCA
[ENA]
¢þ
>WENV182556721
OJDH01000005
[OJDH] seawater metagenome; Sea water
60865
60792
-
Cys
GCA
[ENA]
¢þ
>WENV182558676
OJDN01000461
[OJDN] seawater metagenome; Sea water
7062
6989
-
Cys
GCA
[ENA]
¢þ
>WENV183061270
OLHZ01002427
[OLHZ] seawater metagenome; Sea water
3656
3729
+
Cys
GCA
[ENA]
¢þ
>WENV183624041
OOGB01015258
[OOGB] marine metagenome; sea ice
669
596
-
Cys
GCA
[ENA]
¢þ
>WENV170014639
AYSL01002090
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
107
180
+
Cys
GCA
[ENA]
¢þ
>WENV170014764
AYSL01009694
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
532
605
+
Cys
GCA
[ENA]
¢þ
>WENV170015644
AZII01000783
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
270
197
-
Cys
GCA
[ENA]
¢þ
>WENV170130777
CENR01029055
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4314
4241
-
Cys
GCA
[ENA]
¢þ
>WENV170242854
CEQO01092278
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2679
2752
+
Cys
GCA
[ENA]
¢þ
>WENV170791381
MDSV01081894
[MDSV] marine metagenome; seawater
1148
1075
-
Cys
GCA
[ENA]
¢þ
>WENV170950464
MEHZ011498296
[MEHZ] marine metagenome; marine surface water
80
7
-
Cys
GCA
[ENA]
¢þ
>WENV170951870
MEHZ011573965
[MEHZ] marine metagenome; marine surface water
411
484
+
Cys
GCA
[ENA]
¢þ
>WENV170951888
MEHZ011575178
[MEHZ] marine metagenome; marine surface water
10
83
+
Cys
GCA
[ENA]
¢þ
>WENV170951999
MEHZ011579672
[MEHZ] marine metagenome; marine surface water
80
7
-
Cys
GCA
[ENA]
¢þ
>C191163841
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2148913
2148986
+
Cys
GCA
-
¡û
>W1910377598
FUKN01000013
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
357371
357298
-
Cys
GCA
[ENA]
¡û
>W1910891651
NEXR01000007
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
47986
48059
+
Cys
GCA
[ENA]
¡û
>W1911203631
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
603566
603639
+
Cys
GCA
[ENA]
¡û
>W1911534849
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
36626
36699
+
Cys
GCA
[ENA]
¡û
>W1810155465
PJAS01000059
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
69672
69599
-
Cys
GCA
[ENA]
¡û
>W1810155489
PJAT01000050
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
52620
52693
+
Cys
GCA
[ENA]
¡û
>W1810156182
PJBD01000033
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
19431
19358
-
Cys
GCA
[ENA]
¡û
>W1810156351
PJBF01000062
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
23465
23538
+
Cys
GCA
[ENA]
¡û
>W1810156415
PJBH01000004
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
23464
23537
+
Cys
GCA
[ENA]
¡û
>W1810157406
PJBY01000012
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
2944
3017
+
Cys
GCA
[ENA]
¡û
>W1810671425
QJSU01000002
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
369565
369492
-
Cys
GCA
[ENA]
¡û
>W1810692661
QLKS01000002
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
283966
283893
-
Cys
GCA
[ENA]
¡û
>C161042760
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
1105385
1105312
-
Cys
GCA
-
¡û
>C161042808
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
1116603
1116530
-
Cys
GCA
[Ensembl]
¡û
>C161079288
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
1092597
1092524
-
Cys
GCA
[Ensembl]
¡û
>W121043512
AHVZ01000022
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
39506
39579
+
Cys
GCA
[ENA]
¡û
>W1610642090
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
1149854
1149781
-
Cys
GCA
[ENA]
¡û
>W1610752325
LNDJ01000052
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
33585
33658
+
Cys
GCA
[ENA]
¡û
>W1610774097
LNUO01000180
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
3519
3446
-
Cys
GCA
[ENA]
¡û
>W1610987139
LWHM01000034
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-49 [LWHM]
11037
10964
-
Cys
GCA
[ENA]
¡û
>W1610987175
LWHN01000037
Gammaproteobacteria
Pseudohongiella nitratireducens SCS-111 [LWHN]
11037
10964
-
Cys
GCA
[ENA]
¡û
>W1710513805
FNAL01000004
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
162909
162836
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK