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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.781234 (39 seq.)
>W1710853368
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
61641
61714
+
Cys
GCA
[ENA]
¡û
>W131146346
AQHR01000112
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
76811
76882
+
Cys
GCA
[ENA]
¡û
>W131211930
ATNM01000197
Bacteroidota
Cyclobacterium qasimii M12-11B [ATNM]
139030
139103
+
Cys
GCA
[ENA]
¡û
>W131235003
AULF01000015
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
869
798
-
Cys
GCA
[ENA]
¡û
>W1711704550
MSPQ01000002
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
227822
227895
+
Cys
GCA
[ENA]
¡û
>W1711751692
MUNY01000066
Bacteroidota
Algoriphagus sp. A40 [MUNY]
39819
39746
-
Cys
GCA
[ENA]
¡û
>w023332
AAXU01000004
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
368973
368900
-
Cys
GCA
[ENA]
¡û
>WENV183729487
PJTQ01050621
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
378
449
+
Cys
GCA
[ENA]
¢þ
>WENV183737865
PJUD01041796
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
157
228
+
Cys
GCA
[ENA]
¢þ
>WENV183741832
PJUG01022799
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
327
256
-
Cys
GCA
[ENA]
¢þ
>WENV183742458
PJUI01000001
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
808174
808245
+
Cys
GCA
[ENA]
¢þ
>WENV183746484
POYD01030990
[POYD] biofilm metagenome; PVC pipe from biofilm reactor
886
815
-
Cys
GCA
[ENA]
¢þ
>WENV170012325
APMI01154123
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
273
346
+
Cys
GCA
[ENA]
¢þ
>WENV170613462
FUWD012805967
[FUWD] metagenome; unknown
417
346
-
Cys
GCA
[ENA]
¢þ
>C181187358
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
4155667
4155594
-
Cys
GCA
-
¡û
>C191175207
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
2346608
2346535
-
Cys
GCA
-
¡û
>C191189182
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
2472718
2472645
-
Cys
GCA
-
¡û
>C191226451
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
5761193
5761266
+
Cys
GCA
-
¡û
>W141699651
JMIH01000014
Bacteroidota
Anditalea andensis [JMIH]
458847
458920
+
Cys
GCA
[ENA]
¡û
>W1911496550
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
527268
527339
+
Cys
GCA
[ENA]
¡û
>W1810365011
PVTR01000009
Bacteroidota
Mongoliibacter ruber DSM 27929 [PVTR]
84433
84506
+
Cys
GCA
[ENA]
¡û
>W1810405035
PYLS01000007
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
103070
102997
-
Cys
GCA
[ENA]
¡û
>W1810606289
QGOL01000014
Bacteroidota
Algoriphagus litoralis DSL-12 [QGOL]
152390
152461
+
Cys
GCA
[ENA]
¡û
>W1810704217
QMHN01000001
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
364035
363964
-
Cys
GCA
[ENA]
¡û
>W1810704271
QMHO01000005
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
159272
159345
+
Cys
GCA
[ENA]
¡û
>W1810704323
QMHP01000010
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
113042
112971
-
Cys
GCA
[ENA]
¡û
>W1810704366
QMHQ01000006
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
105666
105737
+
Cys
GCA
[ENA]
¡û
>W1810705061
QMIK01000005
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
353057
353128
+
Cys
GCA
[ENA]
¡û
>C151090031
CP012040
Bacteroidota
Cyclobacterium amurskyense KCTC 12363 [CP012040]
2673162
2673089
-
Cys
GCA
[Ensembl]
¡û
>SRA1051950
SRR035098.112197
454 Sequencing (SRP001819)
46
119
+
Cys
GCA
[SRA]
>SRA1052205
SRR035098.159958
454 Sequencing (SRP001819)
47
120
+
Cys
GCA
[SRA]
>C11105736
CP002955
Bacteroidota
Cyclobacterium marinum DSM 745 [CP002955]
2658477
2658404
-
Cys
GCA
[Ensembl]
¡û
>W1511206117
JMTN01000013
Bacteroidota
Pedobacter glucosidilyticus DD6b [JMTN]
19669
19598
-
Cys
GCA
[ENA]
¡û
>W1511509427
JXRA01000060
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
29271
29342
+
Cys
GCA
[ENA]
¡û
>C131003314
CP003346
Bacteroidota
Echinicola vietnamensis DSM 17526 [CP003346]
2473879
2473806
-
Cys
GCA
[Ensembl]
¡û
>W1610716492
LLWP01000002
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
61641
61714
+
Cys
GCA
[ENA]
¡û
>W1710542618
FNZH01000002
Bacteroidota
Cyclobacterium xiamenense halophilum [FNZH]
914818
914745
-
Cys
GCA
[ENA]
¡û
>W1710593056
FRCY01000002
Bacteroidota
Cyclobacterium lianum [FRCY]
256396
256469
+
Cys
GCA
[ENA]
¡û
>W1710606376
FWXT01000004
Bacteroidota
Pedobacter africanus [FWXT]
125800
125727
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK