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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782080 (13 seq.)
>C08011017
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1499505
1499435
-
Gln
CTG
[Ensembl]
¡û
>WENV170676045
LDZR01000631
[LDZR] terrestrial metagenome; oil reservoir sample K2
17505
17578
+
Gln
CTG
[ENA]
¢þ
>WENV170676948
LDZS01003351
[LDZS] terrestrial metagenome; oil reservoir sample K3
3019
2946
-
Gln
CTG
[ENA]
¢þ
>W141561609
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
852454
852527
+
Gln
CTG
[ENA]
¡û
>W09113915
ABZD01000002
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
28363
28436
+
Gln
CTG
[ENA]
¡û
>C09106821
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
802473
802400
-
Gln
CTG
[Ensembl]
¡û
>C141000353
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1511521
1511448
-
Gln
CTG
-
¡û
>C151001684
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
923394
923467
+
Gln
CTG
-
¡û
>C151078481
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
1075892
1075819
-
Gln
CTG
[Ensembl]
¡û
>W1610520949
JGCK01000027
Thermotogota
Kosmotoga sp. DU53 [JGCK]
11698
11625
-
Gln
CTG
[ENA]
¡û
>W1610612865
LGFF01000010
Thermotogota
Pseudothermotoga lettingae [LGFF]
17505
17578
+
Gln
CTG
[ENA]
¡û
>W1710617199
JGCK01000027
Thermotogota
Kosmotoga sp. DU53 [JGCK]
11698
11625
-
Gln
CTG
[ENA]
¡û
>W1710734147
LGFF01000010
Thermotogota
Pseudothermotoga lettingae [LGFF]
17505
17578
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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