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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782087 (100 seq.)
>W1711082127
LSTQ01000008
Actinomycetota
Corynebacterium stationis [LSTQ]
111402
111329
-
Gly
CCC
[ENA]
¡û
>W1711097664
LTIW01000084
Actinomycetota
Corynebacterium sp. HMSC058E07 [LTIW]
75356
75429
+
Gly
CCC
[ENA]
¡û
>W1711102643
LTNW01000085
Actinomycetota
Corynebacterium sp. HMSC034A01 [LTNW]
112218
112147
-
Gly
CCC
[ENA]
¡û
>W131159191
AQUV01000004
Actinomycetota
Corynebacterium capitovis DSM 44611 [AQUV]
184298
184371
+
Gly
CCC
[ENA]
¡û
>W131159278
AQUX01000005
Actinomycetota
Corynebacterium doosanense DSM 45436 [AQUX]
103626
103553
-
Gly
CCC
[ENA]
¡û
>W1711107188
LTSO01000016
Actinomycetota
Corynebacterium sp. HMSC075D04 [LTSO]
101179
101106
-
Gly
CCC
[ENA]
¡û
>W1711108840
LTUC01000072
Actinomycetota
Corynebacterium sp. HMSC071B10 [LTUC]
601
528
-
Gly
CCC
[ENA]
¡û
>W131164523
ARAV01000011
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
73534
73461
-
Gly
CCC
[ENA]
¡û
>W131169244
AREP01000006
Actinomycetota
Corynebacterium pilosum DSM 20521 [AREP]
64767
64840
+
Gly
CCC
[ENA]
¡û
>W1711185862
LWNT01000016
Actinomycetota
Corynebacterium sp. HMSC08F01 [LWNT]
15110
15183
+
Gly
CCC
[ENA]
¡û
>W1711186002
LWNW01000007
Actinomycetota
Corynebacterium sp. HMSC08A12 [LWNW]
107845
107918
+
Gly
CCC
[ENA]
¡û
>W1711186507
LWOH01000002
Actinomycetota
Corynebacterium sp. HMSC05H05 [LWOH]
27383
27312
-
Gly
CCC
[ENA]
¡û
>W1711186910
LWOP01000027
Actinomycetota
Corynebacterium sp. HMSC30G07 [LWOP]
5070
5143
+
Gly
CCC
[ENA]
¡û
>W1711186985
LWOR01000091
Actinomycetota
Corynebacterium sp. HMSC29G08 [LWOR]
78856
78783
-
Gly
CCC
[ENA]
¡û
>W1711208386
LXGG01000002
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
91106
91035
-
Gly
CCC
[ENA]
¡û
>W131251675
CAVS020000039
Actinomycetota
Corynebacterium ihumii GD7 [CAVS]
62867
62938
+
Gly
CCC
[ENA]
¡û
>W1711482549
MKAX01000235
Actinomycetota
Corynebacterium sp. BCW_4722 concisus [MKAX]
50083
50156
+
Gly
CCC
[ENA]
¡û
>W1711517367
MLJM01000015
Actinomycetota
Corynebacterium sp. HMSC074A01 [MLJM]
605
532
-
Gly
CCC
[ENA]
¡û
>W1711717101
MTGK01000009
Actinomycetota
Corynebacterium jeikeium [MTGK]
3970
3897
-
Gly
CCC
[ENA]
¡û
>C171001834
CP009244
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 DSM 20306 [CP009244]
2530118
2530191
+
Gly
CCC
-
¡û
>C171098517
CP019705
Actinomycetota
Corynebacterium ammoniagenes KCCM 40472 [CP019705]
2616700
2616773
+
Gly
CCC
-
¡û
>C171101846
CP019963
Actinomycetota
Corynebacterium stationis LMG 21670 [CP019963]
2422394
2422467
+
Gly
CCC
-
¡û
>C005923
CR931997
Actinomycetota
Corynebacterium jeikeium K411 K411 [CR931997]
404985
405058
+
Gly
CCC
[Ensembl]
¡û
>WENV180402709
OBRQ01013107
[OBRQ] human gut metagenome; ENVO:feces
258
185
-
Gly
CCC
[ENA]
¢þ
>WENV181212266
OFBN01002954
[OFBN] metagenome; hydrothermal vent
192
265
+
Gly
CCC
[ENA]
¢þ
>WENV181212340
OFBO01002182
[OFBO] metagenome; hydrothermal vent
401
328
-
Gly
CCC
[ENA]
¢þ
>WENV181212576
OFBR01002254
[OFBR] metagenome; hydrothermal vent
192
265
+
Gly
CCC
[ENA]
¢þ
>W141243570
CAJP01000034
Actinomycetota
Corynebacterium timonense 5401744 [CAJP]
64173
64246
+
Gly
CCC
[ENA]
¡û
>W141259176
CBYN010000082
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
6565
6636
+
Gly
CCC
[ENA]
¡û
>WENV182636328
OJKZ01003542
[OJKZ] metagenome; surface
3644
3717
+
Gly
CCC
[ENA]
¢þ
>WENV182640325
OJLB01002933
[OJLB] metagenome; surface
638
711
+
Gly
CCC
[ENA]
¢þ
>WENV182642236
OJLL01008032
[OJLL] metagenome; surface
54
125
+
Gly
CCC
[ENA]
¢þ
>WENV182643057
OJLS01000322
[OJLS] metagenome; surface
8894
8821
-
Gly
CCC
[ENA]
¢þ
>WENV182643331
OJLU01001402
[OJLU] metagenome; surface
555
482
-
Gly
CCC
[ENA]
¢þ
>WENV182643837
OJLW01001632
[OJLW] metagenome; surface
4435
4508
+
Gly
CCC
[ENA]
¢þ
>WENV182644729
OJLY01000214
[OJLY] metagenome; surface
38782
38709
-
Gly
CCC
[ENA]
¢þ
>WENV182645984
OJLZ01018199
[OJLZ] metagenome; surface
476
403
-
Gly
CCC
[ENA]
¢þ
>WENV182671665
OJNM01000997
[OJNM] metagenome; surface
3839
3912
+
Gly
CCC
[ENA]
¢þ
>WENV183511290
OMJG01000002
[OMJG] food metagenome; Cotija cheese
140096
140023
-
Gly
CCC
[ENA]
¢þ
>WENV170721468
LSQX01191646
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
160
87
-
Gly
CCC
[ENA]
¢þ
>W141452840
JFCF01000020
Actinomycetota
Corynebacterium jeikeium [JFCF]
1380
1307
-
Gly
CCC
[ENA]
¡û
>W141452926
JFCG01000048
Actinomycetota
Corynebacterium jeikeium [JFCG]
4466
4393
-
Gly
CCC
[ENA]
¡û
>W141452966
JFCH01000054
Actinomycetota
Corynebacterium jeikeium [JFCH]
152894
152967
+
Gly
CCC
[ENA]
¡û
>W141453019
JFCI01000031
Actinomycetota
Corynebacterium jeikeium [JFCI]
133
60
-
Gly
CCC
[ENA]
¡û
>W141453048
JFCJ01000054
Actinomycetota
Corynebacterium jeikeium [JFCJ]
15676
15749
+
Gly
CCC
[ENA]
¡û
>W141453073
JFCK01000145
Actinomycetota
Corynebacterium jeikeium [JFCK]
95187
95260
+
Gly
CCC
[ENA]
¡û
>W141453118
JFCL01000004
Actinomycetota
Corynebacterium jeikeium [JFCL]
198055
198128
+
Gly
CCC
[ENA]
¡û
>W141453188
JFCM01000029
Actinomycetota
Corynebacterium jeikeium [JFCM]
116076
116149
+
Gly
CCC
[ENA]
¡û
>W141453220
JFCN01000005
Actinomycetota
Corynebacterium jeikeium [JFCN]
186191
186264
+
Gly
CCC
[ENA]
¡û
>W141453307
JFCO01000067
Actinomycetota
Corynebacterium jeikeium [JFCO]
128056
128129
+
Gly
CCC
[ENA]
¡û
>W141453353
JFCP01000025
Actinomycetota
Corynebacterium jeikeium [JFCP]
43521
43594
+
Gly
CCC
[ENA]
¡û
>W141453409
JFCQ01000028
Actinomycetota
Corynebacterium jeikeium [JFCQ]
286320
286393
+
Gly
CCC
[ENA]
¡û
>W141453451
JFCR01000014
Actinomycetota
Corynebacterium jeikeium [JFCR]
44841
44768
-
Gly
CCC
[ENA]
¡û
>C181039038
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
2314289
2314360
+
Gly
CCC
-
¡û
>C181143891
CP026948
Actinomycetota
Corynebacterium liangguodongii 2184 [CP026948]
2111958
2112031
+
Gly
CCC
-
¡û
>C181214767
LS483459
Actinomycetota
Corynebacterium jeikeium NCTC11914 [LS483459]
2260232
2260159
-
Gly
CCC
-
¡û
>C181215096
LS483464
Actinomycetota
Corynebacterium renale NCTC7448 [LS483464]
613126
613197
+
Gly
CCC
-
¡û
>C181225929
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
2351899
2351972
+
Gly
CCC
-
¡û
>W09124026
ACHJ01000014
Actinomycetota
Corynebacterium lipophiloflavum DSM 44291 [ACHJ]
20530
20457
-
Gly
CCC
[ENA]
¡û
>W09127973
ACLJ01000067
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
49203
49130
-
Gly
CCC
[ENA]
¡û
>W1910226166
FMTZ01000004
Actinomycetota
Corynebacterium jeikeium [FMTZ]
114062
114133
+
Gly
CCC
[ENA]
¡û
>W1910339916
FTLL01000022
Actinomycetota
Corynebacterium urinipleomorphum Marseille-P2799 [FTLL]
5979
5906
-
Gly
CCC
[ENA]
¡û
>W1910442337
FWFE01000005
Actinomycetota
Corynebacterium casei JB4 [FWFE]
100845
100772
-
Gly
CCC
[ENA]
¡û
>W1910469838
FWYQ01000024
Actinomycetota
Corynebacterium fournieri Marseille-P2948 [FWYQ]
6623
6552
-
Gly
CCC
[ENA]
¡û
>W1911179016
NQMQ01000007
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
70985
71058
+
Gly
CCC
[ENA]
¡û
>W1911243357
NSGK01000017
Actinomycetota
Corynebacterium sp. NML 150383 [NSGK]
281
208
-
Gly
CCC
[ENA]
¡û
>W1911243398
NSGL01000003
Actinomycetota
Corynebacterium sp. NML 120412 [NSGL]
6279
6206
-
Gly
CCC
[ENA]
¡û
>W1911243437
NSGM01000003
Actinomycetota
Corynebacterium hadale NML00-0156 [NSGM]
253193
253266
+
Gly
CCC
[ENA]
¡û
>W1911243490
NSGN01000005
Actinomycetota
Corynebacterium hadale NML99-0020 [NSGN]
99540
99467
-
Gly
CCC
[ENA]
¡û
>W1911243556
NSGO01000008
Actinomycetota
Corynebacterium hadale NML93-0607 [NSGO]
115629
115556
-
Gly
CCC
[ENA]
¡û
>W1911243585
NSGP01000003
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
107797
107724
-
Gly
CCC
[ENA]
¡û
>W1911551216
OVSI01000008
Actinomycetota
Corynebacterium senegalense Marseille-P4329 [OVSI]
137890
137817
-
Gly
CCC
[ENA]
¡û
>W1911596551
PNHG01000003
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
23416
23343
-
Gly
CCC
[ENA]
¡û
>W1911630643
PTJO01000001
Actinomycetota
Corynebacterium alimapuense CCUG 69366 [PTJO]
200058
200131
+
Gly
CCC
[ENA]
¡û
>W1810058148
PDJF01000001
Actinomycetota
Corynebacterium renale DSM 20688 [PDJF]
975622
975551
-
Gly
CCC
[ENA]
¡û
>W1810187526
PKHQ01000008
Actinomycetota
Corynebacterium coyleae UMB0147 [PKHQ]
73456
73529
+
Gly
CCC
[ENA]
¡û
>W1810326727
PUGE01000004
Actinomycetota
Corynebacterium sp. J010B-136 [PUGE]
95260
95187
-
Gly
CCC
[ENA]
¡û
>W1810568899
QEEY01000007
Actinomycetota
Corynebacterium liangguodongii 2185 [QEEY]
15115
15188
+
Gly
CCC
[ENA]
¡û
>C151005938
CP004350
Actinomycetota
Corynebacterium casei LMG S-19264 [CP004350]
2854595
2854668
+
Gly
CCC
[Ensembl]
¡û
>C151012241
CP006764
Actinomycetota
Corynebacterium doosanense CAU 212 = DSM 45436 [CP006764]
2485900
2485973
+
Gly
CCC
[Ensembl]
¡û
>C151034718
CP007790
Actinomycetota
Corynebacterium marinum DSM 44953 [CP007790]
2393616
2393689
+
Gly
CCC
[Ensembl]
¡û
>C151045512
CP009211
Actinomycetota
Corynebacterium imitans DSM 44264 [CP009211]
2269626
2269699
+
Gly
CCC
[Ensembl]
¡û
>C151045596
CP009215
Actinomycetota
Corynebacterium ureicelerivorans IMMIB RIV-2301 [CP009215]
2040236
2040307
+
Gly
CCC
[Ensembl]
¡û
>C151084451
CP011545
Actinomycetota
Corynebacterium testudinoris DSM 44614 [CP011545]
2523353
2523426
+
Gly
CCC
[Ensembl]
¡û
>W10106877
ACYW01000032
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11582
11509
-
Gly
CCC
[ENA]
¡û
>W10116375
ADNS01000013
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
26044
26117
+
Gly
CCC
[ENA]
¡û
>W11109166
ACYW01000032
Actinomycetota
Corynebacterium jeikeium ATCC 43734 [ACYW]
11582
11509
-
Gly
CCC
[ENA]
¡û
>W1511351437
JRNG01000008
Actinomycetota
Corynebacterium tuscaniense DNF00037 [JRNG]
30973
30900
-
Gly
CCC
[ENA]
¡û
>W11121044
ADNS01000013
Actinomycetota
Corynebacterium ammoniagenes DSM 20306 [ADNS]
26044
26117
+
Gly
CCC
[ENA]
¡û
>W1511438998
JUNC01000035
Actinomycetota
Corynebacterium jeikeium 931_CJEI [JUNC]
40906
40833
-
Gly
CCC
[ENA]
¡û
>W1511644809
LDYD01000003
Actinomycetota
Corynebacterium pilosum CIP103422 [LDYD]
187645
187572
-
Gly
CCC
[ENA]
¡û
>W1511644893
LDYE01000008
Actinomycetota
Corynebacterium renale CIP 52.96 [LDYE]
238415
238486
+
Gly
CCC
[ENA]
¡û
>C161070428
CP014279
Actinomycetota
Corynebacterium stationis ATCC 6872 [CP014279]
2601181
2601254
+
Gly
CCC
[Ensembl]
¡û
>W121127400
CAFW01000076
Actinomycetota
Corynebacterium casei UCMA 3821 [CAFW]
68141
68068
-
Gly
CCC
[ENA]
¡û
>W1610436815
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
351550
351623
+
Gly
CCC
[ENA]
¡û
>W1610920912
LSTQ01000008
Actinomycetota
Corynebacterium stationis [LSTQ]
111402
111329
-
Gly
CCC
[ENA]
¡û
>W1610996148
LXGG01000002
Actinomycetota
Corynebacterium afermentans subsp. afermentans [LXGG]
91106
91035
-
Gly
CCC
[ENA]
¡û
>W1710436551
FJVG01000020
Actinomycetota
Corynebacterium bouchesdurhonense SN14 [FJVG]
351550
351623
+
Gly
CCC
[ENA]
¡û
>W1710595995
FTMH01000018
Actinomycetota
Corynebacterium afermentans [FTMH]
14111
14040
-
Gly
CCC
[ENA]
¡û
>W1710598787
FTOF01000008
Actinomycetota
Corynebacterium appendicis CIP 107643 [FTOF]
91757
91684
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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