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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782173 (37 seq.)
>W1710923817
LOCK01000042
Bacillota
Desulfitobacterium hafniense [LOCK]
1070
997
-
Gly
TCC
[ENA]
¡û
>W131162703
AQZD01000005
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
352614
352687
+
Gly
TCC
[ENA]
¡û
>W131162739
AQZD01000013
Bacillota
Desulfitobacterium hafniense TCP-A [AQZD]
2499
2426
-
Gly
TCC
[ENA]
¡û
>W131162831
AQZF01000019
Bacillota
Desulfitobacterium sp. PCE1 [AQZF]
3256
3183
-
Gly
TCC
[ENA]
¡û
>W131164681
ARAZ01000016
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
14534
14461
-
Gly
TCC
[ENA]
¡û
>W131164684
ARAZ01000021
Bacillota
Desulfitobacterium hafniense PCP-1 [ARAZ]
38048
38121
+
Gly
TCC
[ENA]
¡û
>C007801
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
1724078
1724151
+
Gly
TCC
[Ensembl]
¡û
>C007821
AP008230
Bacillota
Desulfitobacterium hafniense Y51 [AP008230]
2317493
2317420
-
Gly
TCC
[Ensembl]
¡û
>WENV180345909
OBLN01010541
[OBLN] sediment metagenome; sediment
1060
1133
+
Gly
TCC
[ENA]
¢þ
>w002208
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
67993
67923
-
Gly
TCC
[ENA]
¡û
>w002193
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71144
71074
-
Gly
TCC
[ENA]
¡û
>w002147
AAAW04000001
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
519811
519741
-
Gly
TCC
[ENA]
¡û
>WENV181430419
OGCZ01002338
[OGCZ] metagenome; Human gut stool
132
205
+
Gly
TCC
[ENA]
¢þ
>WENV181722975
OGPW01000883
[OGPW] human gut metagenome; faeces
9953
9880
-
Gly
TCC
[ENA]
¢þ
>WENV181752739
OGQQ01013960
[OGQQ] human gut metagenome; faeces
1959
1886
-
Gly
TCC
[ENA]
¢þ
>WENV181972714
OHAA01002159
[OHAA] human gut metagenome; faeces
10697
10624
-
Gly
TCC
[ENA]
¢þ
>C08005403
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2286042
2286115
+
Gly
TCC
[Ensembl]
¡û
>WENV183529740
ONZZ01004667
[ONZZ] human gut metagenome; human gut
5252
5179
-
Gly
TCC
[ENA]
¢þ
>WENV183581066
OOCN01001924
[OOCN] human gut metagenome; human gut
10993
11066
+
Gly
TCC
[ENA]
¢þ
>WENV183745820
POVV01001050
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
11053
10980
-
Gly
TCC
[ENA]
¢þ
>WENV183776385
PPYF01098709
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10300
10227
-
Gly
TCC
[ENA]
¢þ
>WENV183777674
PPYF01107319
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1891
1964
+
Gly
TCC
[ENA]
¢þ
>WENV170003340
AGTN01304609
[AGTN] bioreactor metagenome; poplar biomass
79
152
+
Gly
TCC
[ENA]
¢þ
>C09103997
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798757
2798830
+
Gly
TCC
[Ensembl]
¡û
>C09104012
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801908
2801981
+
Gly
TCC
[Ensembl]
¡û
>C09104031
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
3391574
3391501
-
Gly
TCC
[Ensembl]
¡û
>W1911534912
OLMM01000004
Bacillota
Acidaminococcus provencensis Marseille-P4266 [OLMM]
305424
305351
-
Gly
TCC
[ENA]
¡û
>W1810798038
QRMX01000003
Bacillota
Acidaminococcus sp. AM05-11 [QRMX]
152309
152382
+
Gly
TCC
[ENA]
¡û
>C11120655
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
2269658
2269585
-
Gly
TCC
[Ensembl]
¡û
>W1511644717
LDXJ01000036
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
23100
23173
+
Gly
TCC
[ENA]
¡û
>C121011472
CP003348
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [CP003348]
2639313
2639240
-
Gly
TCC
[Ensembl]
¡û
>W121007277
AFZX01000069
Bacillota
Desulfitobacterium hafniense DP7 [AFZX]
6087
6014
-
Gly
TCC
[ENA]
¡û
>W121010540
AGJH01000045
Bacillota
Desulfitobacterium dehalogenans ATCC 51507 [AGJH]
1084
1011
-
Gly
TCC
[ENA]
¡û
>W1610781418
LOCK01000042
Bacillota
Desulfitobacterium hafniense [LOCK]
1070
997
-
Gly
TCC
[ENA]
¡û
>W1710593531
FRDN01000015
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
183615
183688
+
Gly
TCC
[ENA]
¡û
>W1710593554
FRDN01000021
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
80404
80331
-
Gly
TCC
[ENA]
¡û
>W1710593560
FRDN01000033
Bacillota
Desulfitobacterium chlororespirans DSM 11544 [FRDN]
15
88
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK