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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782365 (38 seq.)
>W131180839
ARNL01000035
Alphaproteobacteria
Yoonia vestfoldensis DSM 16212 [ARNL]
64084
64011
-
Gly
TCC
[ENA]
¡û
>C171108667
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
3555287
3555360
+
Gly
TCC
-
¡û
>C171118931
CP021431
Alphaproteobacteria
Yoonia vestfoldensis SMR4r [CP021431]
519324
519397
+
Gly
TCC
-
¡û
>w027728
ABCL01000002
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
331843
331916
+
Gly
TCC
[ENA]
¡û
>w012886
AAMV01000019
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
27527
27457
-
Gly
TCC
[ENA]
¡û
>w012724
AAMS01000001
Alphaproteobacteria
Yoonia vestfoldensis SKA53 [AAMS]
89501
89431
-
Gly
TCC
[ENA]
¡û
>WENV180014129
FPIC01061675
[FPIC] soil metagenome; Soil
180
253
+
Gly
TCC
[ENA]
¢þ
>W141020489
AJKJ01000136
Alphaproteobacteria
Citreicella sp. 357 [AJKJ]
16176
16249
+
Gly
TCC
[ENA]
¡û
>WENV180358371
OBNP01042672
[OBNP] marine metagenome; seawater
36
109
+
Gly
TCC
[ENA]
¢þ
>WENV180364113
OBNZ01095448
[OBNZ] marine metagenome; ENVO:00002010
48
121
+
Gly
TCC
[ENA]
¢þ
>WENV181234103
OFET01003273
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
1149
1076
-
Gly
TCC
[ENA]
¢þ
>WENV182591900
OJIO01013406
[OJIO] seawater metagenome; Sea water
909
836
-
Gly
TCC
[ENA]
¢þ
>WENV170024131
BCQL01022705
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
298
371
+
Gly
TCC
[ENA]
¢þ
>WENV170260519
CEQZ01055965
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1021
948
-
Gly
TCC
[ENA]
¢þ
>WENV170269034
CERH01028023
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4578
4505
-
Gly
TCC
[ENA]
¢þ
>WENV170621159
FUWD013050632
[FUWD] metagenome; unknown
2109
2036
-
Gly
TCC
[ENA]
¢þ
>WENV170629326
FUWD013267257
[FUWD] metagenome; unknown
2109
2036
-
Gly
TCC
[ENA]
¢þ
>C181081668
CP023454
Alphaproteobacteria
Rhodobacteraceae bacterium QY30 [CP023454]
2526823
2526750
-
Gly
TCC
-
¡û
>C181169783
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2649703
2649630
-
Gly
TCC
-
¡û
>C181187972
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
2380397
2380470
+
Gly
TCC
-
¡û
>C181194155
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
207563
207636
+
Gly
TCC
-
¡û
>W141818739
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
2148686
2148613
-
Gly
TCC
[ENA]
¡û
>W1911718081
QQVY01000001
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
697183
697256
+
Gly
TCC
[ENA]
¡û
>W1810426273
PYWA01000009
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
54212
54285
+
Gly
TCC
[ENA]
¡û
>W1810471803
QAGK01000011
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
102468
102395
-
Gly
TCC
[ENA]
¡û
>W1810596899
QGGW01000014
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
120
193
+
Gly
TCC
[ENA]
¡û
>W1810658641
QJJL01000003
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
724490
724563
+
Gly
TCC
[ENA]
¡û
>W1810667409
QJPK01000001
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
704324
704397
+
Gly
TCC
[ENA]
¡û
>W1810694727
QLMG01000001
Alphaproteobacteria
Salipiger aestuarii DSM 22011 [QLMG]
212489
212416
-
Gly
TCC
[ENA]
¡û
>SRA1051699
SRR035098.61196
454 Sequencing (SRP001819)
334
407
+
Gly
TCC
[SRA]
>SRA1053099
SRR035098.337125
454 Sequencing (SRP001819)
79
152
+
Gly
TCC
[SRA]
>W1511564684
LADY01000020
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
60376
60303
-
Gly
TCC
[ENA]
¡û
>W1511564710
LADY01000064
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
267714
267787
+
Gly
TCC
[ENA]
¡û
>W1610014789
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
92001
92074
+
Gly
TCC
[ENA]
¡û
>W1610628542
LIGP01000007
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
49382
49455
+
Gly
TCC
[ENA]
¡û
>W1710011680
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
92001
92074
+
Gly
TCC
[ENA]
¡û
>W1710600106
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1438932
1438859
-
Gly
TCC
[ENA]
¡û
>W1710626807
JPKW01000001
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
497065
497138
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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