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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782390 (103 seq.)
>W1710862214
LMEF01000012
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
617662
617733
+
Gln
TTG
[ENA]
¡û
>W1710866943
LMHW01000015
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
333602
333673
+
Gln
TTG
[ENA]
¡û
>W1710866944
LMHW01000015
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
333780
333851
+
Gln
TTG
[ENA]
¡û
>W1710892587
LNDX01000001
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
752993
753066
+
Gln
TTG
[ENA]
¡û
>W131052338
AMYW01000032
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
14130
14201
+
Gln
TTG
[ENA]
¡û
>W131052339
AMYW01000032
Bacteroidota
Flavobacterium sp. WG21 [AMYW]
15136
15207
+
Gln
TTG
[ENA]
¡û
>W1711088306
LSYT01000011
Bacteroidota
Flavobacterium chilense [LSYT]
129969
130042
+
Gln
TTG
[ENA]
¡û
>W1711088307
LSYT01000011
Bacteroidota
Flavobacterium chilense [LSYT]
130138
130209
+
Gln
TTG
[ENA]
¡û
>W131214022
ATTM01000001
Bacteroidota
Flavobacterium antarcticum DSM 19726 [ATTM]
42579
42650
+
Gln
TTG
[ENA]
¡û
>W131225390
AUDN01000022
Bacteroidota
Flavobacterium tegetincola DSM 22377 [AUDN]
103828
103899
+
Gln
TTG
[ENA]
¡û
>W131226998
AUEU01000012
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
30555
30484
-
Gln
TTG
[ENA]
¡û
>W131226999
AUEU01000012
Bacteroidota
Flavobacterium sp. URHB0058 [AUEU]
30222
30149
-
Gln
TTG
[ENA]
¡û
>W131229132
AUGO01000001
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
113204
113131
-
Gln
TTG
[ENA]
¡û
>W131237948
AUSH01000080
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
57053
57126
+
Gln
TTG
[ENA]
¡û
>W1711413515
MGWH01000002
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
657794
657723
-
Gln
TTG
[ENA]
¡û
>W1711431886
MIKE01000011
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
54036
53965
-
Gln
TTG
[ENA]
¡û
>W1711431887
MIKE01000011
Bacteroidota
Flavobacterium tructae spartansii [MIKE]
53024
52953
-
Gln
TTG
[ENA]
¡û
>W1711513060
MLFK01000005
Bacteroidota
Flavobacterium johnsoniae [MLFK]
900651
900722
+
Gln
TTG
[ENA]
¡û
>W1711513061
MLFK01000005
Bacteroidota
Flavobacterium johnsoniae [MLFK]
900833
900904
+
Gln
TTG
[ENA]
¡û
>W1711712537
MTCA01000089
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
5850
5921
+
Gln
TTG
[ENA]
¡û
>C171063310
CP017479
Bacteroidota
Flavobacterium gilvum EM1308 [CP017479]
1495938
1496009
+
Gln
TTG
-
¡û
>C171067623
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
2028884
2028955
+
Gln
TTG
-
¡û
>WENV180040049
LLBY010342926
[LLBY] soil metagenome; soil from tomato rhizosphere
1862
1933
+
Gln
TTG
[ENA]
¢þ
>WENV180284981
OBID01181437
[OBID] metagenome; sludge
259
188
-
Gln
TTG
[ENA]
¢þ
>WENV180390981
OBPM01000360
[OBPM] marine metagenome; ENVO:00002010
4886
4815
-
Gln
TTG
[ENA]
¢þ
>WENV181324593
OFLF01006924
[OFLF] marine metagenome; melt pond
491
562
+
Gln
TTG
[ENA]
¢þ
>WENV181379424
OFRD01001339
[OFRD] wastewater metagenome; Exp Tend CN 100WW
7946
7875
-
Gln
TTG
[ENA]
¢þ
>WENV181383907
OFRH01000596
[OFRH] wastewater metagenome; Exp Tend NO 100WW
3999
3928
-
Gln
TTG
[ENA]
¢þ
>WENV181385337
OFRI01069535
[OFRI] wastewater metagenome; Exp Tend VB 90WW
290
361
+
Gln
TTG
[ENA]
¢þ
>WENV181836253
OGVJ01002759
[OGVJ] freshwater metagenome; freshwater
306
235
-
Gln
TTG
[ENA]
¢þ
>WENV181837074
OGVK01001662
[OGVK] freshwater metagenome; freshwater
655
584
-
Gln
TTG
[ENA]
¢þ
>W141289759
JARP01000002
Bacteroidota
Flavobacterium sp. KJJ [JARP]
914617
914688
+
Gln
TTG
[ENA]
¡û
>WENV183620972
OOFT01000900
[OOFT] marine metagenome; sea ice
2565
2636
+
Gln
TTG
[ENA]
¢þ
>WENV183730088
PJTR01000576
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
4591
4520
-
Gln
TTG
[ENA]
¢þ
>WENV183730089
PJTR01000576
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
4410
4339
-
Gln
TTG
[ENA]
¢þ
>WENV183731068
PJTS01006634
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
34
105
+
Gln
TTG
[ENA]
¢þ
>WENV183731069
PJTS01006634
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
215
286
+
Gln
TTG
[ENA]
¢þ
>WENV183731325
PJTS01038446
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
320
391
+
Gln
TTG
[ENA]
¢þ
>WENV170641918
JFJP01038154
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10160
10087
-
Gln
TTG
[ENA]
¢þ
>WENV170708989
LNFM01000058
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
175279
175206
-
Gln
TTG
[ENA]
¢þ
>C181190979
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
1704906
1704977
+
Gln
TTG
-
¡û
>C181190980
CP030261
Bacteroidota
Flavobacterium fluviale HYN0086 [CP030261]
1705084
1705155
+
Gln
TTG
-
¡û
>C191155245
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
2132156
2132085
-
Gln
TTG
-
¡û
>C191161911
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
381958
381887
-
Gln
TTG
-
¡û
>W141726663
JNCA01000001
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
396739
396812
+
Gln
TTG
[ENA]
¡û
>W141727197
JNCP01000008
Bacteroidota
Flavobacterium gilvum EM1308 [JNCP]
12569
12640
+
Gln
TTG
[ENA]
¡û
>W1910183295
BJNP01000011
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
77719
77790
+
Gln
TTG
[ENA]
¡û
>W1910547037
FZNL01000016
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
150563
150634
+
Gln
TTG
[ENA]
¡û
>W1910792993
MRCQ01000004
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
339178
339249
+
Gln
TTG
[ENA]
¡û
>W1910792994
MRCQ01000004
Bacteroidota
Flavobacterium sp. ACN6 [MRCQ]
339357
339428
+
Gln
TTG
[ENA]
¡û
>W1910809033
MUGV01000015
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
316969
317040
+
Gln
TTG
[ENA]
¡û
>W1910809285
MUHA01000003
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
312097
312168
+
Gln
TTG
[ENA]
¡û
>W1910809286
MUHA01000003
Bacteroidota
Flavobacterium oncorhynchi CCUG 59446 [MUHA]
312277
312348
+
Gln
TTG
[ENA]
¡û
>W1910809452
MUHD01000014
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
378300
378371
+
Gln
TTG
[ENA]
¡û
>W1910809453
MUHD01000014
Bacteroidota
Flavobacterium plurextorum CCUG 60112 [MUHD]
378482
378553
+
Gln
TTG
[ENA]
¡û
>W1910809582
MUHG01000002
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
49124
49053
-
Gln
TTG
[ENA]
¡û
>W1910809583
MUHG01000002
Bacteroidota
Flavobacterium tructae ATCC BAA-2541 [MUHG]
48112
48041
-
Gln
TTG
[ENA]
¡û
>W1910809643
MUHH01000017
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
687562
687633
+
Gln
TTG
[ENA]
¡û
>W1910809644
MUHH01000017
Bacteroidota
Flavobacterium tructae CCUG 60100 [MUHH]
688577
688648
+
Gln
TTG
[ENA]
¡û
>W1911218555
NRQU01000048
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
26726
26655
-
Gln
TTG
[ENA]
¡û
>W1911218556
NRQU01000048
Bacteroidota
Flavobacterium sp. YO12 [NRQU]
26546
26475
-
Gln
TTG
[ENA]
¡û
>W1911218583
NRQV01000004
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
26676
26605
-
Gln
TTG
[ENA]
¡û
>W1911218584
NRQV01000004
Bacteroidota
Flavobacterium sp. YO64 [NRQV]
26497
26426
-
Gln
TTG
[ENA]
¡û
>W1810072070
PEFC01000005
Bacteroidota
Flavobacterium sp. 2 [PEFC]
164484
164555
+
Gln
TTG
[ENA]
¡û
>W1810072071
PEFC01000005
Bacteroidota
Flavobacterium sp. 2 [PEFC]
164663
164734
+
Gln
TTG
[ENA]
¡û
>W1810089338
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
3469172
3469101
-
Gln
TTG
[ENA]
¡û
>W1810530613
QCWV01000011
Bacteroidota
Flavobacterium sp. WLB [QCWV]
28715
28644
-
Gln
TTG
[ENA]
¡û
>W1810530614
QCWV01000011
Bacteroidota
Flavobacterium sp. WLB [QCWV]
28535
28464
-
Gln
TTG
[ENA]
¡û
>W1810577020
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
1421026
1420955
-
Gln
TTG
[ENA]
¡û
>W1810580572
QETH01000053
Bacteroidota
Flavobacterium sp. HTF [QETH]
6434
6505
+
Gln
TTG
[ENA]
¡û
>W1810657733
QJHK01000003
Bacteroidota
Flavobacterium cheongpyeongense IMCC34759 [QJHK]
342201
342272
+
Gln
TTG
[ENA]
¡û
>W1810657801
QJHL01000004
Bacteroidota
Flavobacterium hydrophilum IMCC34758 [QJHL]
313682
313753
+
Gln
TTG
[ENA]
¡û
>W1810669815
QJRJ01000079
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
29998
29927
-
Gln
TTG
[ENA]
¡û
>W1810669816
QJRJ01000079
Bacteroidota
Flavobacterium ginsenosidimutans THG 01 [QJRJ]
29818
29747
-
Gln
TTG
[ENA]
¡û
>W1810672664
QJTO01000009
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
34978
34907
-
Gln
TTG
[ENA]
¡û
>W1810676071
QKLS01000019
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
36561
36490
-
Gln
TTG
[ENA]
¡û
>W1810684398
QKXH01000004
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
319147
319218
+
Gln
TTG
[ENA]
¡û
>W1810861147
QTTR01000001
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
463978
463907
-
Gln
TTG
[ENA]
¡û
>W1810861148
QTTR01000001
Bacteroidota
Flavobacterium sp. GV028 [QTTR]
463731
463660
-
Gln
TTG
[ENA]
¡û
>W1810885440
QUNI01000003
Bacteroidota
Flavobacterium aquicola DSM 100880 [QUNI]
167871
167942
+
Gln
TTG
[ENA]
¡û
>W121086504
AKJZ01000007
Bacteroidota
Flavobacterium sp. CF136 [AKJZ]
173411
173482
+
Gln
TTG
[ENA]
¡û
>W1610521445
JMTM01000014
Bacteroidota
Flavobacterium succinicans [JMTM]
30012
30085
+
Gln
TTG
[ENA]
¡û
>W1610724560
LMEF01000012
Bacteroidota
Flavobacterium sp. Root420 [LMEF]
617662
617733
+
Gln
TTG
[ENA]
¡û
>W1610729289
LMHW01000015
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
333602
333673
+
Gln
TTG
[ENA]
¡û
>W1610729290
LMHW01000015
Bacteroidota
Flavobacterium sp. Root186 [LMHW]
333780
333851
+
Gln
TTG
[ENA]
¡û
>W1610752853
LNDX01000001
Bacteroidota
Flavobacteriaceae bacterium Ga0077528 [LNDX]
752993
753066
+
Gln
TTG
[ENA]
¡û
>W1610922845
LSYT01000011
Bacteroidota
Flavobacterium chilense [LSYT]
129969
130042
+
Gln
TTG
[ENA]
¡û
>W1610922846
LSYT01000011
Bacteroidota
Flavobacterium chilense [LSYT]
130138
130209
+
Gln
TTG
[ENA]
¡û
>W1710531677
FNPS01000006
Bacteroidota
Flavobacterium aquidurense [FNPS]
331036
331107
+
Gln
TTG
[ENA]
¡û
>W1710547997
FODK01000001
Bacteroidota
Flavobacterium sp. fv08 [FODK]
27749
27678
-
Gln
TTG
[ENA]
¡û
>W1710547998
FODK01000001
Bacteroidota
Flavobacterium sp. fv08 [FODK]
27570
27499
-
Gln
TTG
[ENA]
¡û
>W1710585199
FQWE01000002
Bacteroidota
Flavobacterium segetis [FQWE]
91025
90954
-
Gln
TTG
[ENA]
¡û
>W1710585224
FQWF01000001
Bacteroidota
Flavobacterium micromati [FQWF]
179962
179891
-
Gln
TTG
[ENA]
¡û
>W1710586048
FQWW01000002
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
28164
28093
-
Gln
TTG
[ENA]
¡û
>W1710586049
FQWW01000002
Bacteroidota
Flavobacterium sp. CF108 [FQWW]
27985
27914
-
Gln
TTG
[ENA]
¡û
>W1710591526
FRBT01000010
Bacteroidota
Flavobacterium chilense [FRBT]
129894
129967
+
Gln
TTG
[ENA]
¡û
>W1710591527
FRBT01000010
Bacteroidota
Flavobacterium chilense [FRBT]
130063
130134
+
Gln
TTG
[ENA]
¡û
>W1710591722
FRBY01000001
Bacteroidota
Flavobacterium saccharophilum [FRBY]
1255688
1255759
+
Gln
TTG
[ENA]
¡û
>W1710591723
FRBY01000001
Bacteroidota
Flavobacterium saccharophilum [FRBY]
1256025
1256096
+
Gln
TTG
[ENA]
¡û
>W1710591926
FRCC01000001
Bacteroidota
Flavobacterium flevense [FRCC]
621653
621582
-
Gln
TTG
[ENA]
¡û
>W1710620393
JMTM01000014
Bacteroidota
Flavobacterium succinicans [JMTM]
30012
30085
+
Gln
TTG
[ENA]
¡û
>W1710756318
LIAC01000005
Bacteroidota
Flavobacterium sp. NLM [LIAC]
27485
27414
-
Gln
TTG
[ENA]
¡û
>W1710756319
LIAC01000005
Bacteroidota
Flavobacterium sp. NLM [LIAC]
27305
27234
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK