This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78246 (32 seq.)
>W1711223947
LXTR01000016
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
3329
3413
+
Leu
TAA
[ENA]
¡û
>W131066914
ANPJ01000004
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
5934
6020
+
Leu
TAA
[ENA]
¡û
>W131236518
AUMK01000013
Bacteroidota
Aquimarina latercula DSM 2041 [AUMK]
176487
176573
+
Leu
TAA
[ENA]
¡û
>W131229960
AUHF01000001
Bacteroidota
Christiangramia portivictoriae DSM 23547 [AUHF]
715527
715611
+
Leu
TAA
[ENA]
¡û
>w013023
AAMZ01000002
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
15410
15498
+
Leu
TAA
[ENA]
¡û
>WENV182546836
OJBP01007061
[OJBP] seawater metagenome; Sea water
713
629
-
Leu
TAA
[ENA]
¢þ
>W141276326
JADR01000008
Bacteroidota
Olleya marilimosa CAM030 [JADR]
37263
37349
+
Leu
TAA
[ENA]
¡û
>WENV170229026
CEQG01065003
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
17532
17618
+
Leu
TAA
[ENA]
¢þ
>WENV170297940
CESF01025324
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
40008
40094
+
Leu
TAA
[ENA]
¢þ
>WENV170584047
FUFK010186846
[FUFK] metagenome; unknown
207
123
-
Leu
TAA
[ENA]
¢þ
>WENV170590228
FUFK010704583
[FUFK] metagenome; unknown
576
490
-
Leu
TAA
[ENA]
¢þ
>WENV170593069
FUFK010840450
[FUFK] metagenome; unknown
1159
1075
-
Leu
TAA
[ENA]
¢þ
>WENV170928752
MDTG01139044
[MDTG] marine metagenome; seawater
40145
40231
+
Leu
TAA
[ENA]
¢þ
>WENV170963992
MRWG01001791
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
386
470
+
Leu
TAA
[ENA]
¢þ
>C181113347
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
89553
89469
-
Leu
TAA
-
¡û
>C181175196
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
1776919
1776835
-
Leu
TAA
-
¡û
>C191083444
CP031963
Bacteroidota
Aquimarina sp. BL5 [CP031963]
2579064
2578980
-
Leu
TAA
-
¡û
>C191083569
CP031966
Bacteroidota
Aquimarina sp. AD1 [CP031966]
4611541
4611625
+
Leu
TAA
-
¡û
>C191166153
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
2194073
2194157
+
Leu
TAA
-
¡û
>W141807481
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
1673935
1673851
-
Leu
TAA
[ENA]
¡û
>W1910547658
FZNY01000004
Bacteroidota
Dokdonia pacifica DSM 25597 [FZNY]
259367
259451
+
Leu
TAA
[ENA]
¡û
>W1910693655
MDGO01000009
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
1252601
1252685
+
Leu
TAA
[ENA]
¡û
>W1911535445
OMKC01000002
Bacteroidota
Aquimarina sp. Aq107 [OMKC]
426139
426055
-
Leu
TAA
[ENA]
¡û
>W1810693705
QLLO01000005
Bacteroidota
Olleya aquimaris DSM 24464 [QLLO]
255106
255022
-
Leu
TAA
[ENA]
¡û
>C151048566
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
1661193
1661279
+
Leu
TAA
[Ensembl]
¡û
>C11111597
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
907513
907599
+
Leu
TAA
[Ensembl]
¡û
>W1511360729
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
1567795
1567881
+
Leu
TAA
[ENA]
¡û
>W1511534156
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
1634212
1634126
-
Leu
TAA
[ENA]
¡û
>C161083509
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
320935
321021
+
Leu
TAA
-
¡û
>W1611008318
LXTR01000016
Bacteroidota
Flavobacteriaceae bacterium CP2B [LXTR]
3329
3413
+
Leu
TAA
[ENA]
¡û
>W1710532559
FNQK01000022
Bacteroidota
Bizionia paragorgiae [FNQK]
52772
52858
+
Leu
TAA
[ENA]
¡û
>W1710543541
FOAB01000003
Bacteroidota
Aquimarina amphilecti [FOAB]
395340
395256
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK