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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782791 (43 seq.)
>W131063379
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1658991
1659061
+
Gly
TCC
[ENA]
¡û
>W131087168
AOCI01000072
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
15626
15556
-
Gly
TCC
[ENA]
¡û
>W131203777
ASZQ01000255
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
19800
19730
-
Gly
TCC
[ENA]
¡û
>W1711377915
MDZH01000371
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
30845
30775
-
Gly
TCC
[ENA]
¡û
>W1711603019
MOLN01000018
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
20293
20223
-
Gly
TCC
[ENA]
¡û
>W1711772038
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
93747
93817
+
Gly
TCC
[ENA]
¡û
>C171016635
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2550459
2550529
+
Gly
TCC
-
¡û
>C171112078
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3198712
3198642
-
Gly
TCC
-
¡û
>WENV180111123
OAPN01031550
[OAPN] marine metagenome; 2011
157
87
-
Gly
TCC
[ENA]
¢þ
>W141065585
AQPY01001032
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
905
975
+
Gly
TCC
[ENA]
¡û
>W141242383
CAIH01000303
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
924
994
+
Gly
TCC
[ENA]
¡û
>W141242417
CAII01000535
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
3103
3173
+
Gly
TCC
[ENA]
¡û
>W141242469
CAIJ01000690
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
652
582
-
Gly
TCC
[ENA]
¡û
>W141242500
CAIK01000380
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
936
1006
+
Gly
TCC
[ENA]
¡û
>W141242525
CAIL01000114
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
1822
1892
+
Gly
TCC
[ENA]
¡û
>W141242550
CAIM01000079
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
1084
1154
+
Gly
TCC
[ENA]
¡û
>W141242615
CAIN01000273
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
15040
14970
-
Gly
TCC
[ENA]
¡û
>W141242632
CAIO01000115
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
5522
5452
-
Gly
TCC
[ENA]
¡û
>W141242676
CAIP01000096
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
15400
15470
+
Gly
TCC
[ENA]
¡û
>W141242731
CAIQ01000320
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
3960
4030
+
Gly
TCC
[ENA]
¡û
>W141242877
CAIY01000044
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
285818
285748
-
Gly
TCC
[ENA]
¡û
>C08006365
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
4990912
4990842
-
Gly
TCC
[Ensembl]
¡û
>WENV170680736
LFEF01015971
[LFEF] freshwater metagenome; waterbloom
25880
25950
+
Gly
TCC
[ENA]
¢þ
>C181046175
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4367079
4367149
+
Gly
TCC
-
¡û
>C191007277
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
2866327
2866257
-
Gly
TCC
-
¡û
>W1910020342
BDSG01000022
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
30985
30915
-
Gly
TCC
[ENA]
¡û
>W1910020386
BDSM01000012
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
2091
2161
+
Gly
TCC
[ENA]
¡û
>W1910038646
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
354152
354082
-
Gly
TCC
[ENA]
¡û
>W1910038714
BEIV01000076
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
15537
15607
+
Gly
TCC
[ENA]
¡û
>W1910067362
BEYQ01000007
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
203639
203569
-
Gly
TCC
[ENA]
¡û
>W1910067400
BFAC01000006
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
18151
18081
-
Gly
TCC
[ENA]
¡û
>W1910142343
BIFY01000086
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
4690
4620
-
Gly
TCC
[ENA]
¡û
>W1910665571
MCIH01000083
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
13000
12930
-
Gly
TCC
[ENA]
¡û
>W1910768692
MOLZ01000240
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
3734
3804
+
Gly
TCC
[ENA]
¡û
>C151079366
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2553245
2553315
+
Gly
TCC
[Ensembl]
¡û
>C151080718
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2828914
2828844
-
Gly
TCC
-
¡û
>W1510013627
BBPA01000035
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
92600
92530
-
Gly
TCC
[ENA]
¡û
>W1610550811
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1255109
1255039
-
Gly
TCC
[ENA]
¡û
>W1710004749
AJHB01001655
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
649
579
-
Gly
TCC
[ENA]
¡û
>W1710005099
AJUS01001735
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
651
581
-
Gly
TCC
[ENA]
¡û
>W1710005136
AJUT01001634
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
624
554
-
Gly
TCC
[ENA]
¡û
>W1710005172
AJUU01001617
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
656
586
-
Gly
TCC
[ENA]
¡û
>W1710660688
JXYX01000001
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
1255109
1255039
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK