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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.782892 (71 seq.)
>W1710785358
LJHU01000020
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
4417
4344
-
Gln
TTG
[ENA]
¡û
>W1710862007
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
165697
165770
+
Gln
TTG
[ENA]
¡û
>W1710863821
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
418471
418544
+
Gln
TTG
[ENA]
¡û
>W1710863834
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73460
73533
+
Gln
TTG
[ENA]
¡û
>W1710863835
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73568
73641
+
Gln
TTG
[ENA]
¡û
>W1710865543
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
293297
293224
-
Gln
TTG
[ENA]
¡û
>W131160343
AQWM01000008
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AQWM]
1631
1558
-
Gln
TTG
[ENA]
¡û
>W1711408011
MGLN01000138
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
17069
16996
-
Gln
TTG
[ENA]
¡û
>C171094871
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2246181
2246108
-
Gln
TTG
-
¡û
>WENV180016468
FSVF01000100
[FSVF] metagenome; soil
2589
2516
-
Gln
TTG
[ENA]
¢þ
>WENV180016545
FSVH01000108
[FSVH] metagenome; soil
6742
6815
+
Gln
TTG
[ENA]
¢þ
>WENV180019618
FTCE01000175
[FTCE] metagenome; soil
2607
2534
-
Gln
TTG
[ENA]
¢þ
>WENV180020534
FTCZ01005643
[FTCZ] metagenome; soil
31966
31893
-
Gln
TTG
[ENA]
¢þ
>WENV180020795
FTDB01001974
[FTDB] metagenome; soil
5354
5427
+
Gln
TTG
[ENA]
¢þ
>WENV180020816
FTDB01002303
[FTDB] metagenome; soil
37884
37811
-
Gln
TTG
[ENA]
¢þ
>WENV180021006
FTDJ01000768
[FTDJ] metagenome; soil
2488
2561
+
Gln
TTG
[ENA]
¢þ
>WENV180024753
FTIJ01004304
[FTIJ] metagenome; soil
858
785
-
Gln
TTG
[ENA]
¢þ
>WENV180027634
FTIZ01013219
[FTIZ] metagenome; soil
1609
1536
-
Gln
TTG
[ENA]
¢þ
>WENV180027858
FTIZ01172351
[FTIZ] metagenome; soil
3666
3593
-
Gln
TTG
[ENA]
¢þ
>WENV180028138
FTIZ01752008
[FTIZ] metagenome; soil
4282
4355
+
Gln
TTG
[ENA]
¢þ
>WENV180028554
FTJE01007853
[FTJE] metagenome; soil
684
611
-
Gln
TTG
[ENA]
¢þ
>WENV180028813
FTJH01004167
[FTJH] metagenome; soil
125
52
-
Gln
TTG
[ENA]
¢þ
>WENV180028974
FTJI01000657
[FTJI] metagenome; soil
4163
4236
+
Gln
TTG
[ENA]
¢þ
>WENV180029322
FTJI01618164
[FTJI] metagenome; soil
940
867
-
Gln
TTG
[ENA]
¢þ
>WENV180033801
FTKL01252601
[FTKL] metagenome; soil
262
189
-
Gln
TTG
[ENA]
¢þ
>WENV180033888
FTKM01000007
[FTKM] metagenome; soil
297377
297450
+
Gln
TTG
[ENA]
¢þ
>WENV180034499
FTKR01000656
[FTKR] metagenome; soil
4163
4236
+
Gln
TTG
[ENA]
¢þ
>WENV180034850
FTKR01680554
[FTKR] metagenome; soil
940
867
-
Gln
TTG
[ENA]
¢þ
>WENV180035283
FTKT01074462
[FTKT] metagenome; soil
679
606
-
Gln
TTG
[ENA]
¢þ
>W08010840
ABRU01000042
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
7504
7434
-
Gln
TTG
[ENA]
¡û
>WENV181227455
OFDN01010992
[OFDN] hot springs metagenome; Water
858
785
-
Gln
TTG
[ENA]
¢þ
>WENV181371079
OFQU01017546
[OFQU] wastewater metagenome; Exp Tend CN 90WW
297
224
-
Gln
TTG
[ENA]
¢þ
>W141136699
AWGB01000048
Alphaproteobacteria
Asticcacaulis benevestitus DSM 16100 = ATCC BAA-896 [AWGB]
1372
1299
-
Gln
TTG
[ENA]
¡û
>W141136825
AWGE01000011
Alphaproteobacteria
Asticcacaulis sp. AC466 [AWGE]
32445
32518
+
Gln
TTG
[ENA]
¡û
>W141136854
AWGF01000002
Alphaproteobacteria
Asticcacaulis sp. YBE204 [AWGF]
120607
120534
-
Gln
TTG
[ENA]
¡û
>WENV183696993
OUNJ010000161
[OUNJ] metagenome; soil
11407
11334
-
Gln
TTG
[ENA]
¢þ
>WENV183697064
OUNJ010001702
[OUNJ] metagenome; soil
14
87
+
Gln
TTG
[ENA]
¢þ
>WENV183697264
OUNJ010200431
[OUNJ] metagenome; soil
1546
1619
+
Gln
TTG
[ENA]
¢þ
>WENV183728340
PJTQ01000020
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
2082
2009
-
Gln
TTG
[ENA]
¢þ
>WENV183739789
PJUF01000012
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
2082
2009
-
Gln
TTG
[ENA]
¢þ
>WENV170192811
CEPG01014097
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1731
1658
-
Gln
TTG
[ENA]
¢þ
>WENV170200936
CEPP01016016
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
50454
50381
-
Gln
TTG
[ENA]
¢þ
>WENV170574066
FLYM01003141
[FLYM] hot springs metagenome; Sediment
235
308
+
Gln
TTG
[ENA]
¢þ
>WENV170574562
FLYM01060303
[FLYM] hot springs metagenome; Sediment
2430
2503
+
Gln
TTG
[ENA]
¢þ
>WENV170658932
JUGB01000514
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
1854
1781
-
Gln
TTG
[ENA]
¢þ
>WENV170680689
LFEF01010618
[LFEF] freshwater metagenome; waterbloom
403
330
-
Gln
TTG
[ENA]
¢þ
>WENV170711607
LNFM01006033
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
6315
6388
+
Gln
TTG
[ENA]
¢þ
>WENV170711927
LNFM01008440
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
5489
5562
+
Gln
TTG
[ENA]
¢þ
>WENV170829123
MDSZ01003262
[MDSZ] marine metagenome; seawater
69519
69446
-
Gln
TTG
[ENA]
¢þ
>C191005618
AP018827
Alphaproteobacteria
Asticcacaulis excentricus M6 [AP018827, AP018828]
605353
605426
+
Gln
TTG
-
¡û
>C191189137
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
2087337
2087264
-
Gln
TTG
-
¡û
>W141712432
JMQR01000015
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
2167
2240
+
Gln
TTG
[ENA]
¡û
>W09133865
ACQR01000014
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [ACQR]
46038
46111
+
Gln
TTG
[ENA]
¡û
>W141731217
JNIX01000007
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
470295
470368
+
Gln
TTG
[ENA]
¡û
>W1910744281
MIAJ01000047
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPHIGHO2_01_FULL_65_20 [MIAJ]
16430
16357
-
Gln
TTG
[ENA]
¡û
>W1911737839
QTTA01000010
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
226067
226140
+
Gln
TTG
[ENA]
¡û
>W1911738150
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
373198
373125
-
Gln
TTG
[ENA]
¡û
>W1810503518
QBKE01000005
Alphaproteobacteria
Asticcacaulis sp. CF398 [QBKE]
115337
115410
+
Gln
TTG
[ENA]
¡û
>W10109844
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
156652
156579
-
Gln
TTG
[ENA]
¡û
>C10102219
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
2489250
2489177
-
Gln
TTG
[Ensembl]
¡û
>C11100673
CP002395
Alphaproteobacteria
Asticcacaulis excentricus CB 48 [CP002395, CP002396]
1334457
1334530
+
Gln
TTG
[Ensembl]
¡û
>W11112281
ADBM01000002
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
156652
156579
-
Gln
TTG
[ENA]
¡û
>C161047041
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2170428
2170501
+
Gln
TTG
[Ensembl]
¡û
>C161049362
CP013002
Alphaproteobacteria
Caulobacter henricii CB4 [CP013002]
2800772
2800699
-
Gln
TTG
[Ensembl]
¡û
>W1610649164
LJHU01000020
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
4417
4344
-
Gln
TTG
[ENA]
¡û
>W1610724353
LMEB01000009
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
165697
165770
+
Gln
TTG
[ENA]
¡û
>W1610726167
LMFL01000001
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
418471
418544
+
Gln
TTG
[ENA]
¡û
>W1610726180
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73460
73533
+
Gln
TTG
[ENA]
¡û
>W1610726181
LMFL01000005
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
73568
73641
+
Gln
TTG
[ENA]
¡û
>W1610727889
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
293297
293224
-
Gln
TTG
[ENA]
¡û
>W1710505466
FMTS01000001
Alphaproteobacteria
Asticcacaulis taihuensis [FMTS]
539481
539408
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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