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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783430 (32 seq.)
>W1711352949
MDDP01000023
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
130335
130262
-
Cys
GCA
[ENA]
¡û
>W1711797274
MWRZ01000001
Bacteroidota
Zobellia sp. OII3 galactanivorans [MWRZ]
867508
867435
-
Cys
GCA
[ENA]
¡û
>C171036276
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
1583152
1583079
-
Cys
GCA
-
¡û
>WENV180102613
OAOZ01000772
[OAOZ] marine metagenome; ENVO:00002010
1439
1510
+
Cys
GCA
[ENA]
¢þ
>WENV180114984
OAPS01089038
[OAPS] marine metagenome; sea water
79
8
-
Cys
GCA
[ENA]
¢þ
>WENV180209814
OBAL01025213
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
442
371
-
Cys
GCA
[ENA]
¢þ
>WENV180359198
OBNR01014904
[OBNR] marine metagenome; Seawater_00002010_00002149
89
160
+
Cys
GCA
[ENA]
¢þ
>WENV180362148
OBNW01047211
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
223
294
+
Cys
GCA
[ENA]
¢þ
>WENV180367387
OBOE01068198
[OBOE] marine metagenome; ENVO:00002010
190
119
-
Cys
GCA
[ENA]
¢þ
>WENV180394084
OBPR01059118
[OBPR] marine metagenome; ENVO:00002042
102
173
+
Cys
GCA
[ENA]
¢þ
>WENV180394333
OBPS01001353
[OBPS] marine metagenome; ENVO:00002010 seawater
3023
3094
+
Cys
GCA
[ENA]
¢þ
>WENV180394966
OBPT01000092
[OBPT] marine metagenome; ENVO:00002010 seawater
25922
25993
+
Cys
GCA
[ENA]
¢þ
>WENV180396448
OBPV01005056
[OBPV] marine metagenome; ENVO:00002010
380
451
+
Cys
GCA
[ENA]
¢þ
>WENV180397792
OBPZ01008950
[OBPZ] marine metagenome; ENVO:00002010
688
759
+
Cys
GCA
[ENA]
¢þ
>W141067187
ARZX01000003
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
181955
182028
+
Cys
GCA
[ENA]
¡û
>WENV181120808
OEFK01065561
[OEFK] marine metagenome; ENVO:00002010 seawater
361
432
+
Cys
GCA
[ENA]
¢þ
>WENV181126313
OEFV01041482
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
116
45
-
Cys
GCA
[ENA]
¢þ
>WENV182586337
OJHK01000089
[OJHK] seawater metagenome; Sea water
80121
80192
+
Cys
GCA
[ENA]
¢þ
>W09110734
ABVW01000001
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
442582
442511
-
Cys
GCA
[ENA]
¡û
>W141819234
JQMD01000002
Bacteroidota
Zobellia uliginosa [JQMD]
3921899
3921826
-
Cys
GCA
[ENA]
¡û
>W1910545610
FZLT01000032
Bacteroidota
Cellulophaga lytica [FZLT]
22582
22653
+
Cys
GCA
[ENA]
¡û
>W1810121569
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
945125
945196
+
Cys
GCA
[ENA]
¡û
>C151046357
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
1445135
1445062
-
Cys
GCA
[Ensembl]
¡û
>C151098507
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
2004868
2004795
-
Cys
GCA
[Ensembl]
¡û
>C11105688
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
1484358
1484285
-
Cys
GCA
[Ensembl]
¡û
>C161027992
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
2699576
2699503
-
Cys
GCA
[Ensembl]
¡û
>W1610626542
LICJ01000020
Bacteroidota
Polaribacter sp. BACL8 MAG-120419-bin8 [LICJ]
5747
5818
+
Cys
GCA
[ENA]
¡û
>W1610626575
LICK01000021
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
11674
11603
-
Cys
GCA
[ENA]
¡û
>W1710579964
FPIY01000003
Bacteroidota
Cellulophaga fucicola [FPIY]
328909
328836
-
Cys
GCA
[ENA]
¡û
>W1710598535
FTOB01000001
Bacteroidota
Zobellia uliginosa [FTOB]
348915
348988
+
Cys
GCA
[ENA]
¡û
>W1710757669
LICJ01000020
Bacteroidota
Polaribacter sp. BACL8 MAG-120419-bin8 [LICJ]
5747
5818
+
Cys
GCA
[ENA]
¡û
>W1710757702
LICK01000021
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
11674
11603
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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