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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.78736 (12 seq.)
>WENV170024512
BCQL01070343
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
350
436
+
Leu
TAA
[ENA]
¡û
>C181187360
CP030041
Bacteroidota
Echinicola strongylocentroti MEBiC08714 [CP030041]
3014881
3014797
-
Leu
TAA
-
¡û
>C191175209
CP040106
Bacteroidota
Echinicola rosea JL3085 [CP040106]
1116259
1116175
-
Leu
TAA
-
¡û
>C191189157
CP041253
Bacteroidota
Echinicola soli LN3S3 [CP041253]
1163882
1163966
+
Leu
TAA
-
¡û
>W1810531998
QCXY01000013
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
31069
31153
+
Leu
TAA
[ENA]
¡û
>W2011674560
SPSB01000002
Bacteroidota
Algoriphagus sp. XY-J91 [SPSB]
270033
270117
+
Leu
TAA
[ENA]
¡û
>W2310016166
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
3482928
3482844
-
Leu
TAA
[ENA]
¡û
>W2310016169
BQKE01000001
Bacteroidota
Persicobacter diffluens NBRC 15940 [BQKE]
3482566
3482482
-
Leu
TAA
[ENA]
¡û
>W1511590345
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3462690
3462776
+
Leu
TAA
[ENA]
¡û
>W1511590348
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
3463053
3463139
+
Leu
TAA
[ENA]
¡û
>C161046362
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
437015
436929
-
Leu
TAA
-
¡û
>C161046365
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
436653
436567
-
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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