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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.788420 (12 seq.)
>W1711027071
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
40245
40318
+
Cys
GCA
[ENA]
¡û
>C022014
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3174374
3174301
-
Cys
GCA
[Ensembl]
¡û
>C191117193
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1836086
1836159
+
Cys
GCA
-
¡û
>C191117251
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
2749407
2749334
-
Cys
GCA
-
¡û
>C191173257
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
552433
552360
-
Cys
GCA
-
¡û
>C191185846
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
1514045
1514118
+
Cys
GCA
-
¡û
>W09103158
AAIV01000058
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
4246
4173
-
Cys
GCA
[ENA]
¡û
>W1810155303
PJAP01000600
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
3531
3604
+
Cys
GCA
[ENA]
¡û
>W1810157801
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
70600
70673
+
Cys
GCA
[ENA]
¡û
>W1810157832
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
151281
151354
+
Cys
GCA
[ENA]
¡û
>W1610875183
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
40245
40318
+
Cys
GCA
[ENA]
¡û
>WENV078045
AAFY01012916
Fossil microbial community from Whale Fall (Santa Cruz Basin)
105
178
+
Cys
GCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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