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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.788528 (37 seq.)
>C025643
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
774349
774422
+
Gln
TTG
-
¡û
>C025812
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
173901
173828
-
Gln
TTG
[Ensembl]
¡û
>W141082673
AUNF01000067
Thermotogota
Thermotoga sp. A7A [AUNF]
76304
76377
+
Gln
TTG
[ENA]
¡û
>WENV181408369
OGCH01002171
[OGCH] hot springs metagenome; hot springs
1863
1936
+
Gln
TTG
[ENA]
¢þ
>C08010923
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
171824
171754
-
Gln
TTG
[Ensembl]
¡û
>WENV170675924
LDZQ01001419
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1132
1059
-
Gln
TTG
[ENA]
¢þ
>WENV170676156
LDZR01001262
[LDZR] terrestrial metagenome; oil reservoir sample K2
11358
11431
+
Gln
TTG
[ENA]
¢þ
>WENV170676747
LDZS01002139
[LDZS] terrestrial metagenome; oil reservoir sample K3
9253
9326
+
Gln
TTG
[ENA]
¢þ
>W09106541
AAWB01000001
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
87857
87784
-
Gln
TTG
[ENA]
¡û
>W09107403
ABIJ01000002
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
97432
97359
-
Gln
TTG
[ENA]
¡û
>W09112204
ABXR01000002
Thermotogota
Marinitoga piezophila KA3 [ABXR]
176500
176573
+
Gln
TTG
[ENA]
¡û
>C141011554
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
171261
171188
-
Gln
TTG
-
¡û
>W1910635449
LNDD01000003
Thermotogota
Thermotoga sp. SG1 [LNDD]
327251
327324
+
Gln
TTG
[ENA]
¡û
>C151004299
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
174516
174443
-
Gln
TTG
[Ensembl]
¡û
>C151004345
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
172495
172422
-
Gln
TTG
[Ensembl]
¡û
>C151030659
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
170630
170557
-
Gln
TTG
[Ensembl]
¡û
>C151074603
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
774361
774434
+
Gln
TTG
[Ensembl]
¡û
>C151076957
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
774361
774434
+
Gln
TTG
[Ensembl]
¡û
>C151077003
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
774361
774434
+
Gln
TTG
[Ensembl]
¡û
>W10105842
ACXW01000005
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
111994
112067
+
Gln
TTG
[ENA]
¡û
>C10113484
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
548067
548140
+
Gln
TTG
[Ensembl]
¡û
>W11108162
ACXW01000005
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
111994
112067
+
Gln
TTG
[ENA]
¡û
>W11180787
AGIJ01000001
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
559160
559087
-
Gln
TTG
[ENA]
¡û
>W121062168
AJII01000002
Thermotogota
Thermotoga sp. EMP [AJII]
323385
323458
+
Gln
TTG
[ENA]
¡û
>C131012493
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
774362
774435
+
Gln
TTG
-
¡û
>W1610540340
JSFG01000012
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
27603
27530
-
Gln
TTG
[ENA]
¡û
>W1610540408
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
11105
11032
-
Gln
TTG
[ENA]
¡û
>W1610540432
JSFI01000009
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
27604
27531
-
Gln
TTG
[ENA]
¡û
>W1610540477
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
347808
347881
+
Gln
TTG
[ENA]
¡û
>W1610612902
LGFG01000014
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
11358
11431
+
Gln
TTG
[ENA]
¡û
>W1610613137
LGFM01000008
Thermotogota
Thermotoga sp. 47_83 [LGFM]
9253
9326
+
Gln
TTG
[ENA]
¡û
>W1710643361
JSFG01000012
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
27603
27530
-
Gln
TTG
[ENA]
¡û
>W1710643429
JSFH01000012
Thermotogota
Thermotoga sp. Mc24 [JSFH]
11105
11032
-
Gln
TTG
[ENA]
¡û
>W1710643453
JSFI01000009
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
27604
27531
-
Gln
TTG
[ENA]
¡û
>W1710643498
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
347808
347881
+
Gln
TTG
[ENA]
¡û
>W1710734184
LGFG01000014
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
11358
11431
+
Gln
TTG
[ENA]
¡û
>W1710734344
LGFM01000008
Thermotogota
Thermotoga sp. 47_83 [LGFM]
9253
9326
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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