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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.788529 (39 seq.)
>C025671
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
419338
419265
-
Gln
CTG
-
¡û
>C025774
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
515521
515594
+
Gln
CTG
[Ensembl]
¡û
>W141070753
ASGQ01000003
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
139833
139906
+
Gln
CTG
[ENA]
¡û
>W141082672
AUNF01000061
Thermotogota
Thermotoga sp. A7A [AUNF]
2055
2128
+
Gln
CTG
[ENA]
¡û
>WENV181408238
OGCH01001077
[OGCH] hot springs metagenome; hot springs
3733
3660
-
Gln
CTG
[ENA]
¢þ
>C08010885
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
535768
535841
+
Gln
CTG
[Ensembl]
¡û
>WENV170676155
LDZR01001257
[LDZR] terrestrial metagenome; oil reservoir sample K2
10977
11050
+
Gln
CTG
[ENA]
¢þ
>WENV170676761
LDZS01002182
[LDZS] terrestrial metagenome; oil reservoir sample K3
790
863
+
Gln
CTG
[ENA]
¢þ
>W09106577
AAWB01000036
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
7789
7716
-
Gln
CTG
[ENA]
¡û
>W09107445
ABIJ01000014
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
23645
23718
+
Gln
CTG
[ENA]
¡û
>W09112226
ABXR01000014
Thermotogota
Marinitoga piezophila KA3 [ABXR]
7729
7656
-
Gln
CTG
[ENA]
¡û
>C09110631
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
263397
263470
+
Gln
CTG
[Ensembl]
¡û
>C141011516
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
526279
526352
+
Gln
CTG
-
¡û
>W1910635431
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
29309
29382
+
Gln
CTG
[ENA]
¡û
>W1910635512
LNDE01000002
Thermotogota
Thermotoga sp. KOL6 [LNDE]
187103
187030
-
Gln
CTG
[ENA]
¡û
>C151004261
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
548709
548782
+
Gln
CTG
[Ensembl]
¡û
>C151004307
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
512167
512240
+
Gln
CTG
[Ensembl]
¡û
>C151030621
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
545401
545474
+
Gln
CTG
[Ensembl]
¡û
>C151074631
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
419343
419270
-
Gln
CTG
[Ensembl]
¡û
>C151076985
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
419343
419270
-
Gln
CTG
[Ensembl]
¡û
>C151077031
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
419343
419270
-
Gln
CTG
[Ensembl]
¡û
>W10105841
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
8004
7931
-
Gln
CTG
[ENA]
¡û
>C10113520
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
187004
186931
-
Gln
CTG
[Ensembl]
¡û
>W11108161
ACXW01000003
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
8004
7931
-
Gln
CTG
[ENA]
¡û
>W11180818
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
416160
416087
-
Gln
CTG
[ENA]
¡û
>W121062161
AJII01000001
Thermotogota
Thermotoga sp. EMP [AJII]
8445
8372
-
Gln
CTG
[ENA]
¡û
>C131012521
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
419343
419270
-
Gln
CTG
-
¡û
>W1610540346
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
93433
93506
+
Gln
CTG
[ENA]
¡û
>W1610540363
JSFH01000002
Thermotogota
Thermotoga sp. Mc24 [JSFH]
20413
20486
+
Gln
CTG
[ENA]
¡û
>W1610540437
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
331000
331073
+
Gln
CTG
[ENA]
¡û
>W1610540482
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
8144
8071
-
Gln
CTG
[ENA]
¡û
>W1610612901
LGFG01000009
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
10977
11050
+
Gln
CTG
[ENA]
¡û
>W1610613151
LGFM01000051
Thermotogota
Thermotoga sp. 47_83 [LGFM]
790
863
+
Gln
CTG
[ENA]
¡û
>W1710643367
JSFG01000014
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
93433
93506
+
Gln
CTG
[ENA]
¡û
>W1710643384
JSFH01000002
Thermotogota
Thermotoga sp. Mc24 [JSFH]
20413
20486
+
Gln
CTG
[ENA]
¡û
>W1710643458
JSFI01000010
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
331000
331073
+
Gln
CTG
[ENA]
¡û
>W1710643503
JSFJ01000012
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
8144
8071
-
Gln
CTG
[ENA]
¡û
>W1710734183
LGFG01000009
Thermotogota
Thermotoga petrophila naphthophila [LGFG]
10977
11050
+
Gln
CTG
[ENA]
¡û
>W1710734358
LGFM01000051
Thermotogota
Thermotoga sp. 47_83 [LGFM]
790
863
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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