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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789651 (35 seq.)
>W131204210
ATAY01000022
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
15438
15365
-
Gly
TCC
[ENA]
¡û
>W131204238
ATAY01000088
Bacillota
Ruminiclostridium papyrosolvens C7 [ATAY]
190408
190335
-
Gly
TCC
[ENA]
¡û
>w020760
AAVC01000067
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
98
171
+
Gly
TCC
[ENA]
¡û
>w020722
AAVC01000001
Bacillota
Ruminiclostridium cellulolyticum H10 [AAVC]
102297
102370
+
Gly
TCC
[ENA]
¡û
>W141067369
ASAA01000011
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
15461
15534
+
Gly
TCC
[ENA]
¡û
>W141279248
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
2901552
2901625
+
Gly
TCC
[ENA]
¡û
>W141279283
JAGE01000001
Bacillota
Ruminiclostridium josui JCM 17888 [JAGE]
496132
496059
-
Gly
TCC
[ENA]
¡û
>WENV170562589
CZCB01003709
[CZCB] anaerobic digester metagenome; anaerobic digester
1507
1434
-
Gly
TCC
[ENA]
¢þ
>WENV170562780
CZCB01005326
[CZCB] anaerobic digester metagenome; anaerobic digester
21833
21906
+
Gly
TCC
[ENA]
¢þ
>WENV170684280
LFRM01030253
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
38826
38899
+
Gly
TCC
[ENA]
¢þ
>WENV170688717
LFRM01259339
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23189
23262
+
Gly
TCC
[ENA]
¢þ
>WENV170720159
LSQX01143440
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
35938
36011
+
Gly
TCC
[ENA]
¢þ
>WENV170723691
LSQX01278313
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
10544
10617
+
Gly
TCC
[ENA]
¢þ
>WENV170726785
LSQX01394243
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
18426
18353
-
Gly
TCC
[ENA]
¢þ
>C09103062
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
1652937
1653010
+
Gly
TCC
[Ensembl]
¡û
>C09103099
CP001348
Bacillota
Ruminiclostridium cellulolyticum H10 H10; ATCC 35319 [CP001348]
2676679
2676606
-
Gly
TCC
[Ensembl]
¡û
>W1810759878
QPJT01000007
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
46782
46709
-
Gly
TCC
[ENA]
¡û
>W1810759902
QPJT01000026
Bacillota
Anaerobacterium chartisolvens DSM 27016 [QPJT]
62774
62701
-
Gly
TCC
[ENA]
¡û
>W10105903
ACXX01000051
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
15187
15114
-
Gly
TCC
[ENA]
¡û
>W10126170
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29197
29124
-
Gly
TCC
[ENA]
¡û
>W10126173
AEDB01000038
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
11918
11845
-
Gly
TCC
[ENA]
¡û
>W11108180
ACXX02000001
Bacillota
Ruminiclostridium papyrosolvens DSM 2782 [ACXX]
583191
583264
+
Gly
TCC
[ENA]
¡û
>W11133431
AEDB01000028
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
29197
29124
-
Gly
TCC
[ENA]
¡û
>W11133434
AEDB01000038
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
11918
11845
-
Gly
TCC
[ENA]
¡û
>C121005038
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1420768
1420841
+
Gly
TCC
[Ensembl]
¡û
>C121009825
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
1221777
1221850
+
Gly
TCC
[Ensembl]
¡û
>C121009860
CP003259
Bacillota
Clostridium sp. BNL1100 [CP003259]
3120498
3120425
-
Gly
TCC
[Ensembl]
¡û
>W1610043739
BBAA01000004
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
75612
75685
+
Gly
TCC
[ENA]
¡û
>W1610043741
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
188
115
-
Gly
TCC
[ENA]
¡û
>W1610605177
LFRR01000064
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
23189
23262
+
Gly
TCC
[ENA]
¡û
>W1610606368
LFSV01000017
Bacillota
Clostridiales bacterium DTU013 [LFSV]
38826
38899
+
Gly
TCC
[ENA]
¡û
>W1710040899
BBAA01000004
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
75612
75685
+
Gly
TCC
[ENA]
¡û
>W1710040901
BBAA01000006
Bacillota
Ruminiclostridium josui JCM 17888 [BBAA]
188
115
-
Gly
TCC
[ENA]
¡û
>W1710726497
LFRR01000064
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
23189
23262
+
Gly
TCC
[ENA]
¡û
>W1710727655
LFSV01000017
Bacillota
Clostridiales bacterium DTU013 [LFSV]
38826
38899
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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