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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789719 (16 seq.)
>W131108923
APGP01000027
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
58362
58435
+
Gln
CTG
[ENA]
¡û
>W131218292
ATXO01000003
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
9815
9742
-
Gln
CTG
[ENA]
¡û
>C006912
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2390246
2390173
-
Gln
CTG
[Ensembl]
¡û
>WENV180014100
FPIC01055975
[FPIC] soil metagenome; Soil
7111
7184
+
Gln
CTG
[ENA]
¢þ
>WENV181226110
OFDK01000053
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
9056
8983
-
Gln
CTG
[ENA]
¢þ
>WENV181285344
OFGS01000012
[OFGS] hot springs metagenome; Water and soil
9490
9417
-
Gln
CTG
[ENA]
¢þ
>C191131098
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1019429
1019502
+
Gln
CTG
-
¡û
>C10103632
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
988800
988873
+
Gln
CTG
[Ensembl]
¡û
>C11105202
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1052707
1052780
+
Gln
CTG
[Ensembl]
¡û
>C11105394
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1799462
1799389
-
Gln
CTG
[Ensembl]
¡û
>C11105488
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1202449
1202376
-
Gln
CTG
[Ensembl]
¡û
>W11139409
AEKC01000007
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
75919
75992
+
Gln
CTG
[ENA]
¡û
>W11139474
AEKD01000026
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
29588
29661
+
Gln
CTG
[ENA]
¡û
>W1511563962
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1977588
1977515
-
Gln
CTG
[ENA]
¡û
>W1511563999
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
561298
561225
-
Gln
CTG
[ENA]
¡û
>W1511564044
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1141285
1141358
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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