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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789719 (5 seq.)
>WENV180081457
MPMC02118652
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
499
571
+
Asp
GTC
[ENA]
¡û
>WENV180081458
MPMC02118652
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
702
630
-
Asp
GTC
[ENA]
¡û
>WENV180106355
OAPE01083076
[OAPE] marine metagenome; Sterivex cartridges
375
304
-
Asp
GTC
[ENA]
¡û
>WENV180108745
OAPH01273236
[OAPH] marine metagenome; seawater
167
96
-
Asp
GTC
[ENA]
¡û
>WENV180208679
OBAJ01018262
[OBAJ] marine metagenome; Coastal water
205
134
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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