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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.7962 (28 seq.)
>WENV180039560
LLBY010093500
[LLBY] soil metagenome; soil from tomato rhizosphere
527
619
+
Ser
GCT
[ENA]
¡û
>WENV180310973
OBJT01071460
[OBJT] soil metagenome; soil
284
376
+
Ser
GCT
[ENA]
¡û
>WENV180690206
OCZS010000624
[OCZS] soil metagenome; soil
10109
10201
+
Ser
GCT
[ENA]
¡û
>WENV181165103
OEIR01583297
[OEIR] soil metagenome; soil
136
44
-
Ser
GCT
[ENA]
¡û
>WENV181184421
OEKC01000171
[OEKC] metagenome; 1998
5610
5702
+
Ser
GCT
[ENA]
¡û
>WENV183748159
PPFU01016163
[PPFU] hypolithon metagenome; Antarctic Hypolithon
18907
18999
+
Ser
GCT
[ENA]
¡û
>WENV183749982
PPFU01241749
[PPFU] hypolithon metagenome; Antarctic Hypolithon
93
1
-
Ser
GCT
[ENA]
¡û
>WENV183750413
PPFU01299064
[PPFU] hypolithon metagenome; Antarctic Hypolithon
547
639
+
Ser
GCT
[ENA]
¡û
>WENV170372537
CETS01107891
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3007
2915
-
Ser
GCT
[ENA]
¡û
>W1911398106
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1824775
1824683
-
Ser
GCT
[ENA]
¡û
>W1810579413
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1089658
1089566
-
Ser
GCT
[ENA]
¡û
>W1810586281
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
899151
899059
-
Ser
GCT
[ENA]
¡û
>W1810917825
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
2222550
2222642
+
Ser
GCT
[ENA]
¡û
>W2010713007
JACHOV010000003
Alphaproteobacteria
Rhizorhapis suberifaciens DSM 7465 [JACHOV]
97194
97286
+
Ser
GCT
[ENA]
¡û
>W2010731805
JACIJI010000005
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
12019
11927
-
Ser
GCT
[ENA]
¡û
>W2011134914
NWMW01000001
Alphaproteobacteria
Sphingomonas spermidinifaciens 9NM-10 [NWMW]
1824775
1824683
-
Ser
GCT
[ENA]
¡û
>W2011490372
RSEK01000004
Alphaproteobacteria
Altererythrobacter xinjiangensis CCTCC AB 207166 [RSEK]
283869
283777
-
Ser
GCT
[ENA]
¡û
>W2011493744
RWJF01000001
Alphaproteobacteria
Sphingomonas sp. HMF7854 [RWJF]
748865
748773
-
Ser
GCT
[ENA]
¡û
>W2011647512
SNWD01000002
Alphaproteobacteria
Stakelama pacifica DSM 25059 [SNWD]
61129
61037
-
Ser
GCT
[ENA]
¡û
>W2012354026
WJSQ01000212
Alphaproteobacteria
Sphingomonas sp. YJ09 [WJSQ]
591
499
-
Ser
GCT
[ENA]
¡û
>W2110659177
JAHWZX010000005
Alphaproteobacteria
Stakelama sp. CBK3Z-3 [JAHWZX]
597
505
-
Ser
GCT
[ENA]
¡û
>C211134398
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
2284197
2284289
+
Ser
GCT
-
¡û
>C211136840
CP060697
Alphaproteobacteria
Sphingomonas sp. sand1-3 [CP060697]
1915306
1915398
+
Ser
GCT
-
¡û
>C211138789
CP060782
Alphaproteobacteria
Sphingomonas sediminicola KACC 15039 [CP060782]
121485
121393
-
Ser
GCT
-
¡û
>C241138260
CP049869
Alphaproteobacteria
Sphingomonas piscis HDW15B [CP049869]
1683673
1683581
-
Ser
GCT
-
¡û
>C241138276
CP049870
Alphaproteobacteria
Sphingomonas sp. HDW15A [CP049870]
79948
80040
+
Ser
GCT
-
¡û
>C241138357
CP049871
Alphaproteobacteria
Sphingomonas sinipercae HDW15C [CP049871]
574210
574118
-
Ser
GCT
-
¡û
>WENV077854
AAFX01114575
Soil microbial communities from Minnesota Farm
85
179
+
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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