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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.802153 (11 seq.)
>WENV180020152
FTCV01002508
[FTCV] metagenome; soil
7301
7228
-
Gln
CTG
[ENA]
¢þ
>C181020303
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4887750
4887677
-
Gln
CTG
-
¡û
>C191170859
CP039690
Alphaproteobacteria
Phreatobacter stygius KCTC 52518 [CP039690]
5944854
5944927
+
Gln
CTG
-
¡û
>W1911148357
NPEU01000034
Alphaproteobacteria
Rhodoplanes elegans DSM 11907 [NPEU]
20244
20171
-
Gln
CTG
[ENA]
¡û
>W1911148501
NPEX01000063
Alphaproteobacteria
Rhodoplanes roseus DSM 5909 [NPEX]
16425
16498
+
Gln
CTG
[ENA]
¡û
>W1911653573
QDGA01000019
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
63331
63258
-
Gln
CTG
[ENA]
¡û
>W1810735501
QOIO01000018
Alphaproteobacteria
Microvirga aerophila DSM 21344 [QOIO]
102616
102689
+
Gln
CTG
[ENA]
¡û
>C161001653
AP014854
Alphaproteobacteria
Blastochloris viridis DSM 133 [AP014854]
3458010
3458083
+
Gln
CTG
[Ensembl]
¡û
>C161048033
CP012946
Alphaproteobacteria
Blastochloris viridis ATCC 19567 [CP012946]
1563180
1563107
-
Gln
CTG
-
¡û
>C161108111
LN907867
Alphaproteobacteria
Blastochloris viridis [LN907867]
963152
963079
-
Gln
CTG
[Ensembl]
¡û
>W1710601623
FUXL01000014
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
73423
73350
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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