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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8043 (38 seq.)
>W1711581715
MNUL01000125
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
21516
21424
-
Leu
TAA
[ENA]
¡û
>W1711583949
MNXW01000029
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
22396
22488
+
Leu
TAA
[ENA]
¡û
>W1711584037
MNXY01000198
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
4728
4820
+
Leu
TAA
[ENA]
¡û
>W1711709058
MSYM01000013
Betaproteobacteria
Rhodoferax antarcticus ANT.BR [MSYM]
637034
637126
+
Leu
TAA
[ENA]
¡û
>W1711721739
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
422301
422209
-
Leu
TAA
[ENA]
¡û
>C171091687
CP019239
Betaproteobacteria
Rhodoferax saidenbachensis DSM 22694 [CP019239]
1703758
1703850
+
Leu
TAA
-
¡û
>C171091721
CP019240
Betaproteobacteria
Rhodoferax antarcticus DSM 24876 [CP019240]
1466148
1466240
+
Leu
TAA
-
¡û
>C018599
CP000267
Betaproteobacteria
Rhodoferax ferrireducens T118 DSM 15236 [CP000267]
1681638
1681730
+
Leu
TAA
[Ensembl]
¡û
>w008230
AAJK01000019
Betaproteobacteria
Rhodoferax ferrireducens DSM 15236 [AAJK]
33823
33729
-
Leu
TAA
[ENA]
¡û
>WENV180256919
OBEQ010864916
[OBEQ] groundwater metagenome; groundwater
308
400
+
Leu
TAA
[ENA]
¡û
>WENV180391138
OBPM01017703
[OBPM] marine metagenome; ENVO:00002010
339
431
+
Leu
TAA
[ENA]
¡û
>WENV180395810
OBPT01155212
[OBPT] marine metagenome; ENVO:00002010 seawater
230
322
+
Leu
TAA
[ENA]
¡û
>WENV181365476
OFPR01000816
[OFPR] sediment metagenome; Lake sediment
409
501
+
Leu
TAA
[ENA]
¡û
>WENV181369219
OFQO01012010
[OFQO] freshwater metagenome; Freshwater Lake
193
101
-
Leu
TAA
[ENA]
¡û
>WENV181378135
OFRA01081130
[OFRA] wastewater metagenome; Lake Maggiore Verbania
387
479
+
Leu
TAA
[ENA]
¡û
>WENV181379488
OFRD01002254
[OFRD] wastewater metagenome; Exp Tend CN 100WW
332
424
+
Leu
TAA
[ENA]
¡û
>WENV181385399
OFRI01080699
[OFRI] wastewater metagenome; Exp Tend VB 90WW
94
2
-
Leu
TAA
[ENA]
¡û
>W141142450
AWQR01000031
Betaproteobacteria
Rhodoferax saidenbachensis ED16 [AWQR]
51939
52031
+
Leu
TAA
[ENA]
¡û
>WENV170559799
CXWL01151318
[CXWL] groundwater metagenome; biofilm material
998
906
-
Leu
TAA
[ENA]
¡û
>WENV170639600
JFJP01005306
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11479
11570
+
Leu
TAA
[ENA]
¡û
>W1910700237
MESI01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
83996
84088
+
Leu
TAA
[ENA]
¡û
>W1910744112
MHZY01000186
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
7677
7585
-
Leu
TAA
[ENA]
¡û
>W1911139405
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
507414
507506
+
Leu
TAA
[ENA]
¡û
>W1810305906
PTQY01000002
Betaproteobacteria
Rhodoferax sp. TS-BS-61-7 [PTQY]
164786
164878
+
Leu
TAA
[ENA]
¡û
>W1810594309
QFZK01000001
Betaproteobacteria
Rhodoferax lacus IMCC26218 [QFZK]
143507
143599
+
Leu
TAA
[ENA]
¡û
>W2010640227
JABVZS010000018
Betaproteobacteria
Rhodoferax sp. 4810 [JABVZS]
53076
52984
-
Leu
TAA
[ENA]
¡û
>W2010833663
MESI01000037
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
83996
84088
+
Leu
TAA
[ENA]
¡û
>W2010877544
MHZY01000186
Betaproteobacteria
Rhodoferax sp. RIFCSPLOWO2_12_FULL_60_11 [MHZY]
7677
7585
-
Leu
TAA
[ENA]
¡û
>W2011014905
NOXW01000021
Betaproteobacteria
Rhodoferax sp. TH121 [NOXW]
507414
507506
+
Leu
TAA
[ENA]
¡û
>W2011753113
SZVI01000009
Betaproteobacteria
Rhodoferax sp. BLA1 [SZVI]
485604
485512
-
Leu
TAA
[ENA]
¡û
>W2011958410
VAHD01000003
Betaproteobacteria
Rhodoferax sp. GSA243-2 [VAHD]
17417
17509
+
Leu
TAA
[ENA]
¡û
>W2110600567
JAHFZF010000013
Betaproteobacteria
Rhodoferax sp. U11-2br [JAHFZF]
12135
12227
+
Leu
TAA
[ENA]
¡û
>C201064650
CP036282
Betaproteobacteria
Rhodoferax sediminis Gr-4 [CP036282]
1611547
1611639
+
Leu
TAA
-
¡û
>C211016743
AP024238
Betaproteobacteria
Rhodoferax sp. MIZ03 [AP024238]
3435447
3435355
-
Leu
TAA
-
¡û
>C211118874
CP059068
Betaproteobacteria
Rhodoferax sp. AJA081-3 [CP059068]
1232140
1232048
-
Leu
TAA
-
¡û
>C211314872
CP072852
Betaproteobacteria
Rhodoferax sp. PAMC29310 [CP072852]
1420625
1420533
-
Leu
TAA
-
¡û
>W2110734438
JAJCTH010000001
Betaproteobacteria
Rhodoferax sp. U2-2l [JAJCTH]
71369
71461
+
Leu
TAA
[ENA]
¡û
>W2130043395
NRRK01000041
Betaproteobacteria
Rhodoferax fermentans DSM 10138 [NRRK]
28618
28526
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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