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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80668 (50 seq.)
>W1710944390
LOQS01000019
Actinomycetota
Corynebacterium glutamicum [LOQS]
235268
235353
+
Tyr
GTA
[ENA]
¡û
>W1710944443
LOQT01000019
Actinomycetota
Corynebacterium glutamicum [LOQT]
14861
14946
+
Tyr
GTA
[ENA]
¡û
>W1710944502
LOQV01000018
Actinomycetota
Corynebacterium glutamicum [LOQV]
249604
249519
-
Tyr
GTA
[ENA]
¡û
>W1710944550
LOQW01000009
Actinomycetota
Corynebacterium glutamicum [LOQW]
231702
231617
-
Tyr
GTA
[ENA]
¡û
>W1710944629
LOQX01000022
Actinomycetota
Corynebacterium glutamicum [LOQX]
62954
63039
+
Tyr
GTA
[ENA]
¡û
>W1710944671
LOQY01000045
Actinomycetota
Corynebacterium glutamicum [LOQY]
291
206
-
Tyr
GTA
[ENA]
¡û
>C171074390
CP018175
Actinomycetota
Corynebacterium glutamicum XV [CP018175]
599392
599477
+
Tyr
GTA
-
¡û
>C171111106
CP020658
Actinomycetota
Corynebacterium glutamicum TQ2223 [CP020658]
2238897
2238812
-
Tyr
GTA
-
¡û
>W131156420
AQPS01000037
Actinomycetota
Corynebacterium glutamicum MT [AQPS]
157354
157269
-
Tyr
GTA
[ENA]
¡û
>W131215712
ATVF01000010
Actinomycetota
Corynebacterium callunae DSM 20147 [ATVF]
102215
102300
+
Tyr
GTA
[ENA]
¡û
>C005528
BA000035
Actinomycetota
Corynebacterium efficiens YS-314 [BA000035]
521492
521574
+
Tyr
GTA
[Ensembl]
¡û
>C005667
BA000036
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [BA000036]
495199
495284
+
Tyr
GTA
[Ensembl]
¡û
>C005727
BX927147
Actinomycetota
Corynebacterium glutamicum [BX927147]
495198
495283
+
Tyr
GTA
[Ensembl]
¡û
>C005787
AP009044
Actinomycetota
Corynebacterium glutamicum R [AP009044]
635660
635745
+
Tyr
GTA
[Ensembl]
¡û
>W141026576
AKXP01000012
Actinomycetota
Corynebacterium glutamicum Z188 [AKXP]
13727
13812
+
Tyr
GTA
[ENA]
¡û
>WENV180504684
OCAN01032404
[OCAN] human gut metagenome; faeces
182
265
+
Tyr
GTA
[ENA]
¢þ
>W09127927
ACLI01000125
Actinomycetota
Corynebacterium efficiens YS-314 [ACLI]
18181
18098
-
Tyr
GTA
[ENA]
¡û
>C181001594
AP017369
Actinomycetota
Corynebacterium suranareeae N24 [AP017369]
660747
660830
+
Tyr
GTA
-
¡û
>C181002208
AP017557
Actinomycetota
Corynebacterium glutamicum AJ1511 [AP017557]
596220
596303
+
Tyr
GTA
-
¡û
>C181029617
CP017995
Actinomycetota
Corynebacterium glutamicum C1 [CP017995]
493521
493604
+
Tyr
GTA
-
¡û
>C181064146
CP022394
Actinomycetota
Corynebacterium glutamicum WM001 [CP022394]
145225
145308
+
Tyr
GTA
-
¡û
>C181069955
CP022614
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [CP022614]
554395
554478
+
Tyr
GTA
-
¡û
>C181118418
CP025533
Actinomycetota
Corynebacterium glutamicum ATCC 13032 [CP025533]
496931
497014
+
Tyr
GTA
-
¡û
>C181118482
CP025534
Actinomycetota
Corynebacterium glutamicum HA [CP025534]
1276352
1276435
+
Tyr
GTA
-
¡û
>W141800920
JPDH01000205
Actinomycetota
Corynebacterium glutamicum crenatum [JPDH]
4979
5064
+
Tyr
GTA
[ENA]
¡û
>W1910001225
APJJ01000008
Actinomycetota
Corynebacterium glutamicum ZL-2 [APJJ]
10442
10525
+
Tyr
GTA
[ENA]
¡û
>W1910374172
FUIB01000014
Actinomycetota
Corynebacterium glutamicum B Co 03.31 [FUIB]
14858
14775
-
Tyr
GTA
[ENA]
¡û
>C141004133
CP005959
Actinomycetota
Corynebacterium glutamicum MB001 [CP005959]
495159
495244
+
Tyr
GTA
[Ensembl]
¡û
>W1910573048
JOLA01000045
Actinomycetota
Corynebacterium glutamicum 1006 [JOLA]
131200
131283
+
Tyr
GTA
[ENA]
¡û
>C151032987
CP007722
Actinomycetota
Corynebacterium glutamicum ATCC 21831 [CP007722]
576475
576560
+
Tyr
GTA
[Ensembl]
¡û
>C151033047
CP007724
Actinomycetota
Corynebacterium glutamicum AR1 [CP007724]
545659
545744
+
Tyr
GTA
[Ensembl]
¡û
>C151045666
CP009220
Actinomycetota
Corynebacterium deserti GIMN1.010 [CP009220]
518003
518088
+
Tyr
GTA
-
¡û
>C151069883
CP010451
Actinomycetota
Corynebacterium glutamicum B253 [CP010451]
552737
552822
+
Tyr
GTA
[Ensembl]
¡û
>C151079590
CP011309
Actinomycetota
[Brevibacterium] flavum ATCC 15168 [CP011309]
557614
557699
+
Tyr
GTA
[Ensembl]
¡û
>W1511500670
JXBH01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062 [JXBH]
51583
51668
+
Tyr
GTA
[ENA]
¡û
>W1511524457
JYEG01000009
Actinomycetota
Corynebacterium glutamicum SYPS-062-33a [JYEG]
181238
181153
-
Tyr
GTA
[ENA]
¡û
>W11176866
AFYA01000004
Actinomycetota
Corynebacterium glutamicum S9114 [AFYA]
11227
11312
+
Tyr
GTA
[ENA]
¡û
>C161003031
CP004046
Actinomycetota
[Brevibacterium] flavum ZL-1 [CP004046]
603526
603611
+
Tyr
GTA
-
¡û
>C161003090
CP004062
Actinomycetota
Corynebacterium glutamicum ZL-6 [CP004062]
603559
603644
+
Tyr
GTA
-
¡û
>C161040434
CP012194
Actinomycetota
Corynebacterium glutamicum CP [CP012194]
635357
635442
+
Tyr
GTA
-
¡û
>C161063643
CP013991
Actinomycetota
Corynebacterium glutamicum USDA-ARS-USMARC-56828 [CP013991]
589993
590078
+
Tyr
GTA
[Ensembl]
¡û
>C161081118
CP014984
Actinomycetota
Corynebacterium glutamicum YI [CP014984]
552787
552872
+
Tyr
GTA
-
¡û
>C161089862
CP015622
Actinomycetota
Corynebacterium crudilactis JZ16 [CP015622]
522725
522810
+
Tyr
GTA
[Ensembl]
¡û
>C161096061
CP016335
Actinomycetota
Corynebacterium glutamicum ATCC 13869 [CP016335]
594604
594689
+
Tyr
GTA
-
¡û
>W121016254
AGQQ01000017
Actinomycetota
Corynebacterium glutamicum ATCC 14067 [AGQQ]
62939
63024
+
Tyr
GTA
[ENA]
¡û
>C131012015
CP004047
Actinomycetota
Corynebacterium glutamicum SCgG1 [CP004047]
622653
622738
+
Tyr
GTA
[Ensembl]
¡û
>C131012075
CP004048
Actinomycetota
Corynebacterium glutamicum SCgG2 [CP004048]
622654
622739
+
Tyr
GTA
[Ensembl]
¡û
>C131013463
CP004354
Actinomycetota
Corynebacterium callunae DSM 20147 [CP004354]
451719
451804
+
Tyr
GTA
[Ensembl]
¡û
>C131019740
HE802067
Actinomycetota
Corynebacterium glutamicum K051 ATCC 13032 [HE802067]
495199
495284
+
Tyr
GTA
[Ensembl]
¡û
>W1710039844
BAYH01000008
Actinomycetota
Corynebacterium glutamicum [BAYH]
331480
331565
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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