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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80673 (39 seq.)
>W1711294015
LZZB01000024
Bacillota
Clostridium beijerinckii [LZZB]
12003
11918
-
Leu
GAG
[ENA]
¡û
>W1711294093
LZZC01000079
Bacillota
Clostridium beijerinckii [LZZC]
14507
14592
+
Leu
GAG
[ENA]
¡û
>W1711294116
LZZD01000033
Bacillota
Clostridium beijerinckii [LZZD]
14622
14537
-
Leu
GAG
[ENA]
¡û
>W1711294163
LZZE01000032
Bacillota
Clostridium beijerinckii [LZZE]
14629
14544
-
Leu
GAG
[ENA]
¡û
>W1711294211
LZZF01000013
Bacillota
Clostridium beijerinckii [LZZF]
44053
44138
+
Leu
GAG
[ENA]
¡û
>W1711294221
LZZG01000006
Bacillota
Clostridium beijerinckii [LZZG]
43996
44081
+
Leu
GAG
[ENA]
¡û
>W1711294287
LZZH01000021
Bacillota
Clostridium beijerinckii [LZZH]
43959
44044
+
Leu
GAG
[ENA]
¡û
>W1711294310
LZZI01000018
Bacillota
Clostridium beijerinckii [LZZI]
43868
43953
+
Leu
GAG
[ENA]
¡û
>W1711294374
LZZJ01000114
Bacillota
Clostridium beijerinckii [LZZJ]
13097
13012
-
Leu
GAG
[ENA]
¡û
>W1711294436
LZZK01000038
Bacillota
Clostridium beijerinckii [LZZK]
44279
44364
+
Leu
GAG
[ENA]
¡û
>W1711320430
MBAF01000013
Bacillota
Clostridium beijerinckii [MBAF]
141455
141370
-
Leu
GAG
[ENA]
¡û
>W131156901
AQQG01000145
Bacillota
Clostridium diolis DSM 15410 [AQQG]
43982
44067
+
Leu
GAG
[ENA]
¡û
>W1711794355
MWMH01000006
Bacillota
Clostridium beijerinckii [MWMH]
339527
339442
-
Leu
GAG
[ENA]
¡û
>W1711902878
MZGT01000019
Bacillota
Clostridium chromiireducens [MZGT]
34819
34734
-
Leu
GAG
[ENA]
¡û
>W1712096552
NHZR01000006
Bacillota
Clostridium diolis [NHZR]
343627
343542
-
Leu
GAG
[ENA]
¡û
>C171045844
CP016090
Bacillota
Clostridium beijerinckii BAS/B3/I/124 [CP016090]
893453
893538
+
Leu
GAG
-
¡û
>C005089
CP000721
Bacillota
Clostridium beijerinckii NCIMB 8052 [CP000721]
973865
973950
+
Leu
GAG
[Ensembl]
¡û
>w011457
AALO01000004
Bacillota
Clostridium beijerinckii NCIMB 8052 [AALO]
44707
44794
+
Leu
GAG
[ENA]
¡û
>WENV180232004
OBCO01000054
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
235289
235204
-
Leu
GAG
[ENA]
¢þ
>WENV180232760
OBCP01000005
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
709559
709474
-
Leu
GAG
[ENA]
¢þ
>WENV180569570
OCLR01000186
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
59010
58925
-
Leu
GAG
[ENA]
¢þ
>WENV180570324
OCLS01000044
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
43996
44081
+
Leu
GAG
[ENA]
¢þ
>WENV180571121
OCLT01000006
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
44054
44139
+
Leu
GAG
[ENA]
¢þ
>WENV180573440
OCLW01000017
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
44054
44139
+
Leu
GAG
[ENA]
¢þ
>WENV180639439
OCRL01000005
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
753658
753573
-
Leu
GAG
[ENA]
¢þ
>WENV180640596
OCRM01000053
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
235285
235200
-
Leu
GAG
[ENA]
¢þ
>W141083152
AUPH01003005
Bacillota
Clostridium beijerinckii AAU1 [AUPH]
465
380
-
Leu
GAG
[ENA]
¡û
>W141200255
AYXR01000007
Bacillota
Clostridium beijerinckii NRRL B-598 [AYXR]
117216
117131
-
Leu
GAG
[ENA]
¡û
>C181203654
LN908213
Bacillota
Clostridium beijerinckii [LN908213]
1017953
1018038
+
Leu
GAG
-
¡û
>W141560224
JHXK01000008
Bacillota
Clostridium beijerinckii HUN142 [JHXK]
299652
299567
-
Leu
GAG
[ENA]
¡û
>W1911766183
QXDJ01000002
Bacillota
Clostridium chromiireducens C1 [QXDJ]
49616
49701
+
Leu
GAG
[ENA]
¡û
>W1810147470
PIQP01000004
Bacillota
Clostridium beijerinckii WB [PIQP]
44180
44265
+
Leu
GAG
[ENA]
¡û
>W1810250492
PQCR01000034
Bacillota
Clostridium sp. 2-1 [PQCR]
43815
43900
+
Leu
GAG
[ENA]
¡û
>W1810271451
PRKY01000001
Bacillota
Clostridium diolis WST [PRKY]
44315
44400
+
Leu
GAG
[ENA]
¡û
>C151012372
CP006777
Bacillota
Clostridium beijerinckii ATCC 35702 SA-1 [CP006777]
973865
973950
+
Leu
GAG
[Ensembl]
¡û
>C151088368
CP011966
Bacillota
Clostridium beijerinckii NRRL B-598 [CP011966]
5287390
5287305
-
Leu
GAG
-
¡û
>C161023477
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
952728
952813
+
Leu
GAG
[Ensembl]
¡û
>W121102349
AKWA01000040
Bacillota
Clostridium beijerinckii G117 [AKWA]
43839
43924
+
Leu
GAG
[ENA]
¡û
>W1611062453
MBAF01000013
Bacillota
Clostridium beijerinckii [MBAF]
141455
141370
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK