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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80682 (52 seq.)
>W1710875538
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
685989
686074
+
Tyr
GTA
[ENA]
¡û
>W131104601
APCS01000151
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
409
324
-
Tyr
GTA
[ENA]
¡û
>W131176760
ARKH01000089
Deinococcota
Deinococcus aquatilis DSM 23025 [ARKH]
1619
1534
-
Tyr
GTA
[ENA]
¡û
>W131178638
ARLS01000036
Deinococcota
Deinococcus apachensis DSM 19763 [ARLS]
97884
97969
+
Tyr
GTA
[ENA]
¡û
>W1711708248
MSTI01000071
Deinococcota
Deinococcus marmoris [MSTI]
897
812
-
Tyr
GTA
[ENA]
¡û
>W1711743901
MUFV01000001
Deinococcota
Deinococcus sp. LM3 [MUFV]
648684
648769
+
Tyr
GTA
[ENA]
¡û
>W1712080654
NHMK01000009
Deinococcota
Deinococcus indicus [NHMK]
1228
1143
-
Tyr
GTA
[ENA]
¡û
>C007954
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063789
2063704
-
Tyr
GTA
[Ensembl]
¡û
>WENV180232530
OBCO01000744
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180233503
OBCP01000719
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180569936
OCLR01000947
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180570878
OCLS01000941
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180571854
OCLT01000678
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180574126
OCLW01000738
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180640143
OCRL01000672
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV180641117
OCRM01000728
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
431
346
-
Tyr
GTA
[ENA]
¢þ
>WENV181223667
OFDC01064364
[OFDC] hot springs metagenome; Water
379
464
+
Tyr
GTA
[ENA]
¢þ
>W141154793
AXLL01000196
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
5220
5305
+
Tyr
GTA
[ENA]
¡û
>C181134319
CP026516
Deinococcota
Deinococcus sp. NW-56 [CP026516]
687360
687275
-
Tyr
GTA
-
¡û
>C181179577
CP029494
Deinococcota
Deinococcus irradiatisoli 17bor-2 [CP029494]
1070303
1070218
-
Tyr
GTA
-
¡û
>C181185115
CP029774
Deinococcota
Deinococcus actinosclerus SJTR [CP029774]
867301
867216
-
Tyr
GTA
-
¡û
>C181196449
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
200554
200639
+
Tyr
GTA
-
¡û
>W141525697
JHAC01000048
Deinococcota
Deinococcus phoenicis [JHAC]
47942
48027
+
Tyr
GTA
[ENA]
¡û
>C191121237
CP034183
Deinococcota
Deinococcus psychrotolerans S14-83 [CP034183, CP034184]
431830
431745
-
Tyr
GTA
-
¡û
>W141561462
JHYL01000006
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
155436
155521
+
Tyr
GTA
[ENA]
¡û
>W141702089
JMLF01000047
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
798
713
-
Tyr
GTA
[ENA]
¡û
>W141731148
JNIV01000159
Deinococcota
Deinococcus marmoris DSM 12784 [JNIV]
1570
1485
-
Tyr
GTA
[ENA]
¡û
>W141731188
JNIW01000055
Deinococcota
Deinococcus frigens DSM 12807 [JNIW]
907
822
-
Tyr
GTA
[ENA]
¡û
>C09103914
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
720296
720211
-
Tyr
GTA
[Ensembl]
¡û
>W1911597497
PNOR01000040
Deinococcota
Deinococcus planocerae XY-FW106 [PNOR]
667
582
-
Tyr
GTA
[ENA]
¡û
>W1911788259
QYCQ01000011
Deinococcota
Deinococcus sp. RM [QYCQ]
543
458
-
Tyr
GTA
[ENA]
¡û
>W1911802491
QYUJ01000014
Deinococcota
Deinococcus cavernae K2S05-167 [QYUJ]
987096
987181
+
Tyr
GTA
[ENA]
¡û
>W1810003529
BFAG01000003
Deinococcota
Deinococcus aerius TR0125 [BFAG]
401141
401226
+
Tyr
GTA
[ENA]
¡û
>W1810238310
PPPD01000001
Deinococcota
Deinococcus koreensis SJW1-2 [PPPD]
617638
617723
+
Tyr
GTA
[ENA]
¡û
>W1810423365
PYSV01000042
Deinococcota
Deinococcus arcticus OD32 [PYSV]
8154
8239
+
Tyr
GTA
[ENA]
¡û
>C151063666
CP010028
Deinococcota
Deinococcus radiopugnans DY59 [CP010028]
220775
220690
-
Tyr
GTA
[Ensembl]
¡û
>C151081903
CP011389
Deinococcota
Deinococcus soli [ex Cha et al. 2016] N5 [CP011389]
2540163
2540078
-
Tyr
GTA
[Ensembl]
¡û
>C10105356
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063789
2063704
-
Tyr
GTA
[Ensembl]
¡û
>C11107224
CP002536
Deinococcota
Deinococcus proteolyticus MRP [CP002536]
1526361
1526446
+
Tyr
GTA
[Ensembl]
¡û
>C11107283
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
2063789
2063704
-
Tyr
GTA
[Ensembl]
¡û
>C121002091
CP002191
Deinococcota
Deinococcus gobiensis I-0 [CP002191]
1251739
1251654
-
Tyr
GTA
[Ensembl]
¡û
>C161034741
CP011387
Deinococcota
Deinococcus puniceus DY1 [CP011387]
2205457
2205542
+
Tyr
GTA
[Ensembl]
¡û
>C161061620
CP013910
Deinococcota
Deinococcus actinosclerus BM2 [CP013910]
795574
795489
-
Tyr
GTA
[Ensembl]
¡û
>C161082958
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
661892
661977
+
Tyr
GTA
-
¡û
>W1610061580
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598794
2598879
+
Tyr
GTA
[ENA]
¡û
>C131003562
CP003382
Deinococcota
Deinococcus peraridilitoris DSM 19664 [CP003382]
997014
997099
+
Tyr
GTA
[Ensembl]
¡û
>W1610638981
LIYN01000029
Deinococcota
Deinococcus sp. UR1 [LIYN]
565
480
-
Tyr
GTA
[ENA]
¡û
>W1610737884
LMOM01000001
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
685989
686074
+
Tyr
GTA
[ENA]
¡û
>W1710059245
BCMS01000001
Deinococcota
Deinococcus grandis [BCMS]
2598794
2598879
+
Tyr
GTA
[ENA]
¡û
>W1710542292
FNZA01000024
Deinococcota
Deinococcus reticulitermitis [FNZA]
25880
25965
+
Tyr
GTA
[ENA]
¡û
>W1710605314
FWWU01000009
Deinococcota
Deinococcus hopiensis KR-140 [FWWU]
2072217
2072302
+
Tyr
GTA
[ENA]
¡û
>W1710774875
LIYN01000029
Deinococcota
Deinococcus sp. UR1 [LIYN]
565
480
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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