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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80704 (86 seq.)
>W1710776344
LIZN01000009
Actinomycetota
Thermobifida halotolerans [LIZN]
17388
17471
+
Leu
CAG
[ENA]
¡û
>W1711183485
LWLB01000007
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
91857
91774
-
Leu
CAG
[ENA]
¡û
>W1711346050
MCOK01000001
Actinomycetota
Nocardiopsis sinuspersici [MCOK]
5010086
5010003
-
Leu
CAG
[ENA]
¡û
>W1711492064
MKKC01000061
Actinomycetota
Nocardiopsis sp. CNR-923 [MKKC]
57510
57595
+
Leu
CAG
[ENA]
¡û
>W1711613602
MOYN01000052
Actinomycetota
Thermomonospora sp. CIF 1 [MOYN]
18353
18270
-
Leu
CAG
[ENA]
¡û
>W1711710916
MSZZ01000032
Actinomycetota
Thermoactinospora rubra [MSZZ]
11034
11117
+
Leu
CAG
[ENA]
¡û
>C171066456
CP017717
Actinomycetota
Nonomuraea sp. ATCC 55076 [CP017717]
9981067
9980984
-
Leu
CAG
-
¡û
>C171070709
CP017965
Actinomycetota
Nocardiopsis dassonvillei NOCA502F [CP017965]
90813
90896
+
Leu
CAG
-
¡û
>W131053509
ANAC01000026
Actinomycetota
Nocardiopsis alba DSM 43377 [ANAC]
12363
12448
+
Leu
CAG
[ENA]
¡û
>W131053541
ANAD01000142
Actinomycetota
Nocardiopsis halophila DSM 44494 [ANAD]
6652
6569
-
Leu
CAG
[ENA]
¡û
>W131054273
ANAS01000005
Actinomycetota
Nocardiopsis baichengensis YIM 90130 [ANAS]
529260
529177
-
Leu
CAG
[ENA]
¡û
>W131054617
ANAW01000273
Actinomycetota
Nocardiopsis synnemataformans DSM 44143 [ANAW]
18721
18804
+
Leu
CAG
[ENA]
¡û
>W131054659
ANAX01000328
Actinomycetota
Nocardiopsis halotolerans DSM 44410 [ANAX]
17275
17358
+
Leu
CAG
[ENA]
¡û
>W131054726
ANAY01000039
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
34339
34256
-
Leu
CAG
[ENA]
¡û
>W131054781
ANAZ01000049
Actinomycetota
Nocardiopsis valliformis DSM 45023 [ANAZ]
24477
24560
+
Leu
CAG
[ENA]
¡û
>W131054836
ANBA01000027
Actinomycetota
Nocardiopsis ganjiahuensis DSM 45031 [ANBA]
106929
106846
-
Leu
CAG
[ENA]
¡û
>W131054877
ANBB01000057
Actinomycetota
Nocardiopsis potens DSM 45234 [ANBB]
20364
20447
+
Leu
CAG
[ENA]
¡û
>W131054945
ANBC01000772
Actinomycetota
Nocardiopsis lucentensis DSM 44048 [ANBC]
12910
12995
+
Leu
CAG
[ENA]
¡û
>W131054999
ANBD01000161
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
19271
19354
+
Leu
CAG
[ENA]
¡û
>W131055059
ANBE01000048
Actinomycetota
Nocardiopsis xinjiangensis YIM 90004 [ANBE]
42860
42775
-
Leu
CAG
[ENA]
¡û
>W131055124
ANBF01000194
Actinomycetota
Nocardiopsis salina YIM 90010 [ANBF]
10336
10251
-
Leu
CAG
[ENA]
¡û
>W131055175
ANBG01000445
Actinomycetota
Nocardiopsis gilva YIM 90087 [ANBG]
39507
39424
-
Leu
CAG
[ENA]
¡û
>W131055210
ANBH01000256
Actinomycetota
Nocardiopsis chromatogenes YIM 90109 [ANBH]
41157
41074
-
Leu
CAG
[ENA]
¡û
>W131098809
AOSG01000001
Actinomycetota
Thermobifida fusca TM51 [AOSG]
5765
5680
-
Leu
CAG
[ENA]
¡û
>W131179350
ARMI01000037
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
19116
19199
+
Leu
CAG
[ENA]
¡û
>C025606
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
3575001
3574916
-
Leu
CAG
[Ensembl]
¡û
>WENV180018033
FSXZ01002436
[FSXZ] metagenome; soil
5
88
+
Leu
CAG
[ENA]
¢þ
>w001890
AAAQ02000003
Actinomycetota
Thermobifida fusca [AAAQ]
395354
395272
-
Leu
CAG
[ENA]
¡û
>WENV181191674
OEPS010160769
[OEPS] soil metagenome; soil
130
47
-
Leu
CAG
[ENA]
¢þ
>WENV181192481
OEPS010701177
[OEPS] soil metagenome; soil
154
237
+
Leu
CAG
[ENA]
¢þ
>WENV181286120
OFGV01000175
[OFGV] soil metagenome; Clay
1033
950
-
Leu
CAG
[ENA]
¢þ
>W141219699
AZXF01000024
Actinomycetota
Nocardiopsis sp. CNT312 [AZXF]
86911
86826
-
Leu
CAG
[ENA]
¡û
>W141236366
BAZE01000017
Actinomycetota
Nocardiopsis alba TP-A0876 [BAZE]
71159
71074
-
Leu
CAG
[ENA]
¡û
>WENV170564715
CZKW01000373
[CZKW] soil metagenome genome assembly CiPEHR-AK-2010-FBin.13, contig:; soil
4849
4766
-
Leu
CAG
[ENA]
¢þ
>WENV170564822
CZLB01000084
[CZLB] soil metagenome genome assembly CiPEHR-AK-2010-FBin.9, contig:; soil
2457
2372
-
Leu
CAG
[ENA]
¢þ
>C181064837
CP022434
Actinomycetota
Nocardiopsis dassonvillei HZNU_N_1 [CP022434]
90851
90934
+
Leu
CAG
-
¡û
>C181072194
CP022753
Actinomycetota
Nocardiopsis gilva YIM 90087 [CP022753]
508726
508809
+
Leu
CAG
-
¡û
>C191089018
CP032402
Actinomycetota
Thermomonospora amylolytica YIM 77502 [CP032402]
100547
100630
+
Leu
CAG
-
¡û
>C191151516
CP036455
Actinomycetota
Streptomonospora litoralis M2 [CP036455]
90483
90566
+
Leu
CAG
-
¡û
>C191212886
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
4219962
4220045
+
Leu
CAG
-
¡û
>W09109568
ABUI01000020
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [ABUI]
94304
94221
-
Leu
CAG
[ENA]
¡û
>W09110225
ABUZ01000004
Actinomycetota
Thermomonospora curvata DSM 43183 [ABUZ]
312273
312190
-
Leu
CAG
[ENA]
¡û
>W141761073
JOAM01000534
Actinomycetota
Nonomuraea kuesteri [JOAM]
1375
1292
-
Leu
CAG
[ENA]
¡û
>W141767398
JOEP01000011
Actinomycetota
Streptosporangium roseum [JOEP]
59891
59974
+
Leu
CAG
[ENA]
¡û
>W1910285441
FRFF01000005
Actinomycetota
Nocardiopsis sp. JB363 [FRFF]
20855
20938
+
Leu
CAG
[ENA]
¡û
>W1910568588
JEMR01000006
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
118227
118144
-
Leu
CAG
[ENA]
¡û
>W1910575989
JRUV01000292
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
32450
32367
-
Leu
CAG
[ENA]
¡û
>W1911539606
ONLN01000257
Actinomycetota
Thermobifida fusca [ONLN]
9628
9711
+
Leu
CAG
[ENA]
¡û
>W1911709952
QPNC01000031
Actinomycetota
Nocardiopsis sp. FIRDI 009 [QPNC]
19153
19236
+
Leu
CAG
[ENA]
¡û
>W1810046833
NYMS01000011
Actinomycetota
Glycomyces fuscus TRM 49117 [NYMS]
19355
19438
+
Leu
CAG
[ENA]
¡û
>W1810173926
PJOK01000037
Actinomycetota
Nonomuraea indica DRQ-2 [PJOK]
79086
79003
-
Leu
CAG
[ENA]
¡û
>W1810357004
PVNI01000021
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
86263
86346
+
Leu
CAG
[ENA]
¡û
>W1810400314
PYGA01000003
Actinomycetota
Murinocardiopsis flavida DSM 45312 [PYGA]
52929
53012
+
Leu
CAG
[ENA]
¡û
>W1810570454
QEIM01000020
Actinomycetota
Marinitenerispora sediminis TPS83 [QEIM]
28688
28771
+
Leu
CAG
[ENA]
¡û
>W1810570533
QEIN01000131
Actinomycetota
Marinitenerispora sediminis TPS81 [QEIN]
4849
4766
-
Leu
CAG
[ENA]
¡û
>W1810570585
QEIO01000086
Actinomycetota
Marinitenerispora sediminis TPS16 [QEIO]
9966
10049
+
Leu
CAG
[ENA]
¡û
>W1810756416
QPFC01000603
Actinomycetota
Nocardiopsis sp. TNDT3 [QPFC]
228
145
-
Leu
CAG
[ENA]
¡û
>W1810861291
QTTT01000001
Actinomycetota
Thermomonospora umbrina DSM 43927 [QTTT]
3111676
3111593
-
Leu
CAG
[ENA]
¡û
>C10113119
CP001738
Actinomycetota
Thermomonospora curvata DSM 43183 [CP001738]
72822
72905
+
Leu
CAG
[Ensembl]
¡û
>W1511352749
JROO01000017
Actinomycetota
Streptomonospora alba YIM 90003 [JROO]
22698
22783
+
Leu
CAG
[ENA]
¡û
>W1511568503
LAJC01000013
Actinomycetota
Allosalinactinospora lopnorensis CA15-2 [LAJC]
32387
32470
+
Leu
CAG
[ENA]
¡û
>W1511656813
LEKI01000051
Actinomycetota
Nocardiopsis sp. RV163 [LEKI]
18475
18558
+
Leu
CAG
[ENA]
¡û
>W1511697708
LGEC01000087
Actinomycetota
Nocardiopsis sp. NRRL B-16309 [LGEC]
95825
95742
-
Leu
CAG
[ENA]
¡û
>C121001876
CP002041
Actinomycetota
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 [CP002040, CP002041]
414903
414986
+
Leu
CAG
[Ensembl]
¡û
>W1610051348
BBGT01000421
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
2427
2512
+
Leu
CAG
[ENA]
¡û
>W1610067629
BCQS01000001
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
116570
116485
-
Leu
CAG
[ENA]
¡û
>W1610067786
BCQU01000068
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
34780
34697
-
Leu
CAG
[ENA]
¡û
>W1610068518
BCRK01000013
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
50986
50903
-
Leu
CAG
[ENA]
¡û
>W1610068925
BCRR01000091
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
14368
14285
-
Leu
CAG
[ENA]
¡û
>W1610069213
BCSH01000037
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
17976
18059
+
Leu
CAG
[ENA]
¡û
>W1610073741
BCWB01000045
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
15666
15751
+
Leu
CAG
[ENA]
¡û
>C131006741
CP003788
Actinomycetota
Nocardiopsis alba ATCC BAA-2165 [CP003788]
1967173
1967088
-
Leu
CAG
[Ensembl]
¡û
>W1610612190
LGEM01000114
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
16310
16395
+
Leu
CAG
[ENA]
¡û
>W1610640450
LIZN01000009
Actinomycetota
Thermobifida halotolerans [LIZN]
17388
17471
+
Leu
CAG
[ENA]
¡û
>W1710047747
BBGT01000421
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
2427
2512
+
Leu
CAG
[ENA]
¡û
>W1710065002
BCQS01000001
Actinomycetota
Actinomadura latina NBRC 106108 [BCQS]
116570
116485
-
Leu
CAG
[ENA]
¡û
>W1710065159
BCQU01000068
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
34780
34697
-
Leu
CAG
[ENA]
¡û
>W1710065891
BCRK01000013
Actinomycetota
Nocardiopsis trehalosi NBRC 14201 [BCRK]
50986
50903
-
Leu
CAG
[ENA]
¡û
>W1710066298
BCRR01000091
Actinomycetota
Nocardiopsis alborubida subsp. albirubida NBRC 13392 [BCRR]
14368
14285
-
Leu
CAG
[ENA]
¡û
>W1710066586
BCSH01000037
Actinomycetota
Nocardiopsis listeri NBRC 13360 [BCSH]
17976
18059
+
Leu
CAG
[ENA]
¡û
>W1710070859
BCWB01000045
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
15666
15751
+
Leu
CAG
[ENA]
¡û
>W1710526550
FNKK01000002
Actinomycetota
Thermostaphylospora chromogena [FNKK]
1771811
1771894
+
Leu
CAG
[ENA]
¡û
>W1710539622
FNVO01000011
Actinomycetota
Thermomonospora echinospora [FNVO]
76122
76205
+
Leu
CAG
[ENA]
¡û
>W1710588525
FQZK01000018
Actinomycetota
Nocardiopsis flavescens [FQZK]
23301
23386
+
Leu
CAG
[ENA]
¡û
>W1710600742
FUWS01000013
Actinomycetota
Marinactinospora thermotolerans DSM 45154 [FUWS]
128639
128556
-
Leu
CAG
[ENA]
¡û
>W1710733696
LGEM01000114
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
16310
16395
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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