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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8082 (134 seq.)
>C171030932
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
460688
460777
+
Ser
TGA
-
¡û
>C171030933
CP014332
Bacillota
Weissella jogaejeotgali FOL01 [CP014332]
460889
460978
+
Ser
TGA
-
¡û
>W141234677
BAWR01000003
Bacillota
Weissella oryzae SG25 [BAWR]
32202
32113
-
Ser
AGA
[ENA]
¡û
>W141234694
BAWR01000011
Bacillota
Weissella oryzae SG25 [BAWR]
104878
104967
+
Ser
TGA
[ENA]
¡û
>W141234697
BAWR01000012
Bacillota
Weissella oryzae SG25 [BAWR]
72897
72808
-
Ser
TGA
[ENA]
¡û
>W141234708
BAWR01000016
Bacillota
Weissella oryzae SG25 [BAWR]
44687
44598
-
Ser
TGA
[ENA]
¡û
>W141236499
BBIK01000009
Bacillota
Weissella hellenica [BBIK]
6354
6443
+
Pseudo
TGA
[ENA]
¡û
>W141236500
BBIK01000009
Bacillota
Weissella hellenica [BBIK]
6557
6646
+
Ser
TGA
[ENA]
¡û
>C181082822
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1227630
1227541
-
Ser
TGA
-
¡û
>C181082823
CP023501
Bacillota
Weissella paramesenteroides FDAARGOS_414 [CP023501]
1227428
1227339
-
Ser
TGA
-
¡û
>C181143175
CP026847
Bacillota
Weissella koreensis WiKim0080 [CP026847]
1251414
1251503
+
Ser
TGA
-
¡û
>C191013643
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1300552
1300463
-
Ser
TGA
-
¡û
>C191013654
CP017326
Bacillota
Weissella soli KACC 11848 [CP017326]
1220809
1220720
-
Ser
TGA
-
¡û
>W09127177
ACKU01000002
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
91870
91781
-
Ser
TGA
[ENA]
¡û
>W09127179
ACKU01000003
Bacillota
Weissella paramesenteroides ATCC 33313 [ACKU]
117
28
-
Ser
TGA
[ENA]
¡û
>W1910177483
BJDT01000007
Bacillota
Weissella sp. X0750 [BJDT]
6401
6490
+
Ser
TGA
[ENA]
¡û
>W1910177484
BJDT01000007
Bacillota
Weissella sp. X0750 [BJDT]
6604
6693
+
Ser
TGA
[ENA]
¡û
>W1910177916
BJEC01000028
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7695
7784
+
Ser
TGA
[ENA]
¡û
>W1910177917
BJEC01000028
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7896
7985
+
Ser
TGA
[ENA]
¡û
>W1910178037
BJEE01000006
Bacillota
Weissella bombi DSM 28794 [BJEE]
6378
6467
+
Ser
TGA
[ENA]
¡û
>W1910178038
BJEE01000006
Bacillota
Weissella bombi DSM 28794 [BJEE]
6580
6669
+
Ser
TGA
[ENA]
¡û
>W1910178149
BJEG01000007
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
6349
6438
+
Ser
TGA
[ENA]
¡û
>W1910178150
BJEG01000007
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
6551
6640
+
Ser
TGA
[ENA]
¡û
>W1910183990
BJOF01000009
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
83539
83450
-
Ser
TGA
[ENA]
¡û
>W1910184004
BJOF01000028
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
118
29
-
Ser
TGA
[ENA]
¡û
>W1810784466
QRAS01000001
Bacillota
Weissella soli CECT 7031 [QRAS]
831173
831084
-
Ser
TGA
[ENA]
¡û
>W1810784499
QRAS01000003
Bacillota
Weissella soli CECT 7031 [QRAS]
177930
178019
+
Ser
TGA
[ENA]
¡û
>W1810784810
QRAY01000026
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
7650
7739
+
Ser
TGA
[ENA]
¡û
>W1810784811
QRAY01000026
Bacillota
Weissella thailandensis KCTC 3751 [QRAY]
7851
7940
+
Ser
TGA
[ENA]
¡û
>W2010090860
BJDT01000007
Bacillota
Weissella sp. X0750 [BJDT]
6401
6490
+
Ser
TGA
[ENA]
¡û
>W2010090861
BJDT01000007
Bacillota
Weissella sp. X0750 [BJDT]
6604
6693
+
Ser
TGA
[ENA]
¡û
>W2010091293
BJEC01000028
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7695
7784
+
Ser
TGA
[ENA]
¡û
>W2010091294
BJEC01000028
Bacillota
Weissella thailandensis JCM 10695 [BJEC]
7896
7985
+
Ser
TGA
[ENA]
¡û
>W2010091414
BJEE01000006
Bacillota
Weissella bombi DSM 28794 [BJEE]
6378
6467
+
Ser
TGA
[ENA]
¡û
>W2010091415
BJEE01000006
Bacillota
Weissella bombi DSM 28794 [BJEE]
6580
6669
+
Ser
TGA
[ENA]
¡û
>W2010091526
BJEG01000007
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
6349
6438
+
Ser
TGA
[ENA]
¡û
>W2010091527
BJEG01000007
Bacillota
Weissella hellenica NBRC 15553 [BJEG]
6551
6640
+
Ser
TGA
[ENA]
¡û
>W2010097605
BJOF01000009
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
83539
83450
-
Ser
TGA
[ENA]
¡û
>W2010097619
BJOF01000028
Bacillota
Weissella hellenica NBRC 15553 [BJOF]
118
29
-
Ser
TGA
[ENA]
¡û
>W2010104411
BJYO01000004
Bacillota
Weissella soli NBRC 106074 [BJYO]
73786
73697
-
Ser
TGA
[ENA]
¡û
>W2010106547
BKAN01000033
Bacillota
Weissella thailandensis NBRC 109621 [BKAN]
7323
7412
+
Ser
TGA
[ENA]
¡û
>W2010106548
BKAN01000033
Bacillota
Weissella thailandensis NBRC 109621 [BKAN]
7524
7613
+
Ser
TGA
[ENA]
¡û
>W2010138759
BLKA01000007
Bacillota
Weissella sp. X0278 [BLKA]
6409
6498
+
Ser
TGA
[ENA]
¡û
>W2010138760
BLKA01000007
Bacillota
Weissella sp. X0278 [BLKA]
6612
6701
+
Ser
TGA
[ENA]
¡û
>W2010138822
BLKB01000006
Bacillota
Weissella sp. X0401 [BLKB]
6409
6498
+
Ser
TGA
[ENA]
¡û
>W2010138823
BLKB01000006
Bacillota
Weissella sp. X0401 [BLKB]
6612
6701
+
Ser
TGA
[ENA]
¡û
>W2010264642
CABKOP020000008
Bacillota
Weissella paramesenteroides [CABKOP]
92074
91985
-
Ser
TGA
[ENA]
¡û
>W2010264643
CABKOP020000008
Bacillota
Weissella paramesenteroides [CABKOP]
91870
91781
-
Ser
TGA
[ENA]
¡û
>W2010580965
JAAXPK010000023
Bacillota
Weissella thailandensis CCUG 46557 [JAAXPK]
3887
3798
-
Ser
TGA
[ENA]
¡û
>W2010580966
JAAXPK010000023
Bacillota
Weissella thailandensis CCUG 46557 [JAAXPK]
3686
3597
-
Ser
TGA
[ENA]
¡û
>W2010580990
JAAXPL010000001
Bacillota
Weissella soli CCUG 46608 [JAAXPL]
831379
831290
-
Ser
TGA
[ENA]
¡û
>W2010581020
JAAXPL010000002
Bacillota
Weissella soli CCUG 46608 [JAAXPL]
73914
73825
-
Ser
TGA
[ENA]
¡û
>W2010581066
JAAXPM010000007
Bacillota
Weissella hellenica CCUG 33494 [JAAXPM]
83864
83775
-
Ser
TGA
[ENA]
¡û
>W2010581067
JAAXPM010000007
Bacillota
Weissella hellenica CCUG 33494 [JAAXPM]
83662
83573
-
Ser
TGA
[ENA]
¡û
>W2011241211
QFDF01000006
Bacillota
Weissella paramesenteroides TR212 [QFDF]
6453
6542
+
Ser
TGA
[ENA]
¡û
>W2011241212
QFDF01000006
Bacillota
Weissella paramesenteroides TR212 [QFDF]
6655
6744
+
Ser
TGA
[ENA]
¡û
>W2011543896
SDGZ01000013
Bacillota
Weissella sp. 8H-2 [SDGZ]
160405
160316
-
Ser
TGA
[ENA]
¡û
>W2011543941
SDGZ01000020
Bacillota
Weissella sp. 8H-2 [SDGZ]
28398
28309
-
Ser
TGA
[ENA]
¡û
>W2011543943
SDGZ01000024
Bacillota
Weissella sp. 8H-2 [SDGZ]
31163
31074
-
Ser
AGA
[ENA]
¡û
>W2011543947
SDGZ01000027
Bacillota
Weissella sp. 8H-2 [SDGZ]
8320
8409
+
Ser
TGA
[ENA]
¡û
>W2011550654
SDQP01000006
Bacillota
Weissella paramesenteroides N43 [SDQP]
6454
6543
+
Ser
TGA
[ENA]
¡û
>W2011550655
SDQP01000006
Bacillota
Weissella paramesenteroides N43 [SDQP]
6656
6745
+
Ser
TGA
[ENA]
¡û
>W2011550723
SDQQ01000006
Bacillota
Weissella paramesenteroides A37 [SDQQ]
6454
6543
+
Ser
TGA
[ENA]
¡û
>W2011550724
SDQQ01000006
Bacillota
Weissella paramesenteroides A37 [SDQQ]
6656
6745
+
Ser
TGA
[ENA]
¡û
>W2011559698
SGAX01000001
Bacillota
Weissella paramesenteroides WpK4 [SGAX]
1191565
1191476
-
Ser
TGA
[ENA]
¡û
>W2011559699
SGAX01000001
Bacillota
Weissella paramesenteroides WpK4 [SGAX]
1191363
1191274
-
Ser
TGA
[ENA]
¡û
>W2012032891
VHPB01000003
Bacillota
Weissella paramesenteroides DmW_118 [VHPB]
6329
6418
+
Ser
TGA
[ENA]
¡û
>W2012032892
VHPB01000003
Bacillota
Weissella paramesenteroides DmW_118 [VHPB]
6532
6621
+
Ser
TGA
[ENA]
¡û
>W2012032950
VHPC01000001
Bacillota
Weissella paramesenteroides DmW_118119 [VHPC]
6327
6416
+
Ser
TGA
[ENA]
¡û
>W2012032951
VHPC01000001
Bacillota
Weissella paramesenteroides DmW_118119 [VHPC]
6530
6619
+
Ser
TGA
[ENA]
¡û
>W2012033070
VHPD01000017
Bacillota
Weissella paramesenteroides DmW_115114 [VHPD]
6383
6472
+
Ser
TGA
[ENA]
¡û
>W2012033071
VHPD01000017
Bacillota
Weissella paramesenteroides DmW_115114 [VHPD]
6585
6674
+
Ser
TGA
[ENA]
¡û
>W2012033117
VHPE01000007
Bacillota
Weissella paramesenteroides DmW_115113 [VHPE]
6391
6480
+
Ser
TGA
[ENA]
¡û
>W2012033118
VHPE01000007
Bacillota
Weissella paramesenteroides DmW_115113 [VHPE]
6593
6682
+
Ser
TGA
[ENA]
¡û
>W2012033175
VHPF01000009
Bacillota
Weissella paramesenteroides DmW_115112 [VHPF]
6391
6480
+
Ser
TGA
[ENA]
¡û
>W2012033176
VHPF01000009
Bacillota
Weissella paramesenteroides DmW_115112 [VHPF]
6593
6682
+
Ser
TGA
[ENA]
¡û
>W2012033260
VHPG01000010
Bacillota
Weissella paramesenteroides DmW_115 [VHPG]
6389
6478
+
Ser
TGA
[ENA]
¡û
>W2012033261
VHPG01000010
Bacillota
Weissella paramesenteroides DmW_115 [VHPG]
6591
6680
+
Ser
TGA
[ENA]
¡û
>W2012033328
VHPH01000009
Bacillota
Weissella paramesenteroides DmW_115116 [VHPH]
85742
85653
-
Ser
TGA
[ENA]
¡û
>W2012033329
VHPH01000009
Bacillota
Weissella paramesenteroides DmW_115116 [VHPH]
85540
85451
-
Ser
TGA
[ENA]
¡û
>W2012033366
VHPI01000005
Bacillota
Weissella paramesenteroides DmW_109 [VHPI]
85789
85700
-
Ser
TGA
[ENA]
¡û
>W2012033367
VHPI01000005
Bacillota
Weissella paramesenteroides DmW_109 [VHPI]
85587
85498
-
Ser
TGA
[ENA]
¡û
>W2012033457
VHPJ01000010
Bacillota
Weissella paramesenteroides DmW_109110 [VHPJ]
85791
85702
-
Ser
TGA
[ENA]
¡û
>W2012033458
VHPJ01000010
Bacillota
Weissella paramesenteroides DmW_109110 [VHPJ]
85589
85500
-
Ser
TGA
[ENA]
¡û
>W2012033507
VHPK01000012
Bacillota
Weissella paramesenteroides DmW_107108 [VHPK]
6374
6463
+
Ser
TGA
[ENA]
¡û
>W2012033508
VHPK01000012
Bacillota
Weissella paramesenteroides DmW_107108 [VHPK]
6576
6665
+
Ser
TGA
[ENA]
¡û
>W2012033567
VHPL01000010
Bacillota
Weissella paramesenteroides DmW_107105 [VHPL]
123950
123861
-
Ser
TGA
[ENA]
¡û
>W2012033568
VHPL01000010
Bacillota
Weissella paramesenteroides DmW_107105 [VHPL]
123748
123659
-
Ser
TGA
[ENA]
¡û
>W2012033659
VHPM01000037
Bacillota
Weissella paramesenteroides DmW_107104 [VHPM]
123960
123871
-
Ser
TGA
[ENA]
¡û
>W2012033660
VHPM01000037
Bacillota
Weissella paramesenteroides DmW_107104 [VHPM]
123758
123669
-
Ser
TGA
[ENA]
¡û
>W2012033714
VHPN01000016
Bacillota
Weissella paramesenteroides DmW_107101 [VHPN]
123958
123869
-
Ser
TGA
[ENA]
¡û
>W2012033715
VHPN01000016
Bacillota
Weissella paramesenteroides DmW_107101 [VHPN]
123756
123667
-
Ser
TGA
[ENA]
¡û
>W2012033777
VHPO01000007
Bacillota
Weissella paramesenteroides DmW_107102 [VHPO]
123958
123869
-
Ser
TGA
[ENA]
¡û
>W2012033778
VHPO01000007
Bacillota
Weissella paramesenteroides DmW_107102 [VHPO]
123756
123667
-
Ser
TGA
[ENA]
¡û
>W2012033831
VHPP01000001
Bacillota
Weissella paramesenteroides DmW_107 [VHPP]
1143937
1143848
-
Ser
TGA
[ENA]
¡û
>W2012033832
VHPP01000001
Bacillota
Weissella paramesenteroides DmW_107 [VHPP]
1143735
1143646
-
Ser
TGA
[ENA]
¡û
>W2012033920
VHPQ01000011
Bacillota
Weissella paramesenteroides DmW_107106 [VHPQ]
123958
123869
-
Ser
TGA
[ENA]
¡û
>W2012033921
VHPQ01000011
Bacillota
Weissella paramesenteroides DmW_107106 [VHPQ]
123756
123667
-
Ser
TGA
[ENA]
¡û
>W2012033966
VHPR01000008
Bacillota
Weissella paramesenteroides DmW_107100 [VHPR]
6374
6463
+
Ser
TGA
[ENA]
¡û
>W2012033967
VHPR01000008
Bacillota
Weissella paramesenteroides DmW_107100 [VHPR]
6576
6665
+
Ser
TGA
[ENA]
¡û
>W2012034026
VHPS01000006
Bacillota
Weissella paramesenteroides DmW_107099 [VHPS]
123958
123869
-
Ser
TGA
[ENA]
¡û
>W2012034027
VHPS01000006
Bacillota
Weissella paramesenteroides DmW_107099 [VHPS]
123756
123667
-
Ser
TGA
[ENA]
¡û
>W2110579554
JAGXJA010000006
Bacillota
Weissella hellenica 1.2.50 [JAGXJA]
108681
108592
-
Ser
TGA
[ENA]
¡û
>W2110579555
JAGXJA010000006
Bacillota
Weissella hellenica 1.2.50 [JAGXJA]
108478
108389
-
Ser
TGA
[ENA]
¡û
>W2110579608
JAGXJB010000010
Bacillota
Weissella paramesenteroides 3.2.24 [JAGXJB]
6293
6382
+
Ser
TGA
[ENA]
¡û
>W2110579609
JAGXJB010000010
Bacillota
Weissella paramesenteroides 3.2.24 [JAGXJB]
6495
6584
+
Ser
TGA
[ENA]
¡û
>C201055287
CP033608
Bacillota
Weissella hellenica 0916-4-2 [CP033608]
402143
402232
+
Ser
TGA
-
¡û
>C201055288
CP033608
Bacillota
Weissella hellenica 0916-4-2 [CP033608]
402346
402435
+
Ser
TGA
-
¡û
>C201111504
CP042399
Bacillota
Weissella hellenica CBA3632 [CP042399]
1083785
1083874
+
Ser
TGA
-
¡û
>C201111505
CP042399
Bacillota
Weissella hellenica CBA3632 [CP042399]
1083988
1084077
+
Ser
TGA
-
¡û
>C211059789
CP043431
Bacillota
Weissella koreensis SK [CP043431]
1210065
1210154
+
Ser
TGA
-
¡û
>C211137964
CP060724
Bacillota
Weissella diestrammenae KACC 16890 [CP060724]
286214
286125
-
Ser
TGA
-
¡û
>C231220459
CP086020
Bacillota
Weissella hellenica MBEL1842 [CP086020]
1327818
1327907
+
Ser
TGA
-
¡û
>C231220460
CP086020
Bacillota
Weissella hellenica MBEL1842 [CP086020]
1328021
1328110
+
Ser
TGA
-
¡û
>C231615841
CP118737
Bacillota
Weissella paramesenteroides FL3 [CP118737]
461767
461856
+
Ser
TGA
-
¡û
>C231615842
CP118737
Bacillota
Weissella paramesenteroides FL3 [CP118737]
461969
462058
+
Ser
TGA
-
¡û
>C241138611
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
801505
801596
+
Ser
TGA
-
¡û
>C241138643
CP049888
Bacillota
Weissella coleopterorum HDW19 [CP049888]
1262791
1262702
-
Ser
TGA
-
¡û
>C241139390
CP049940
Bacillota
Weissella paramesenteroides W31 [CP049940]
411569
411658
+
Ser
TGA
-
¡û
>C241139391
CP049940
Bacillota
Weissella paramesenteroides W31 [CP049940]
411771
411860
+
Ser
TGA
-
¡û
>C241378290
CP144279
Bacillota
Weissella koreensis DMW12 [CP144279]
1229398
1229487
+
Ser
TGA
-
¡û
>WENV11100348
AEKF01000096
Food metagenome, Jonggazip commercial cabbage kimchi
961
1050
+
Ser
TGA
[ENA]
¡û
>C11123759
CP002899
Bacillota
Weissella koreensis KACC 15510 [CP002899]
1174021
1174110
+
Ser
TGA
[Ensembl]
¡û
>W121082026
AKGG01000005
Bacillota
Weissella koreensis KCTC 3621 [AKGG]
245162
245251
+
Ser
TGA
[ENA]
¡û
>W1610514813
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88587
88498
-
Pseudo
TGA
[ENA]
¡û
>W1610514814
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88385
88296
-
Ser
TGA
[ENA]
¡û
>W1610515254
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6597
6686
+
Pseudo
TGA
[ENA]
¡û
>W1610515255
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6799
6888
+
Ser
TGA
[ENA]
¡û
>W1610528851
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
285557
285468
-
Ser
TGA
[ENA]
¡û
>W1710500503
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88587
88498
-
Pseudo
TGA
[ENA]
¡û
>W1710500504
FMAO01000007
Bacillota
Weissella bombi [FMAO]
88385
88296
-
Ser
TGA
[ENA]
¡û
>W1710500944
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6597
6686
+
Pseudo
TGA
[ENA]
¡û
>W1710500945
FMAW01000009
Bacillota
Weissella hellenica [FMAW]
6799
6888
+
Ser
TGA
[ENA]
¡û
>W1710630441
JQBP01000003
Bacillota
Weissella kandleri [JQBP]
285557
285468
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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