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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80827 (110 seq.)
>W1710989938
LPWU01000065
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
4453
4538
+
Tyr
GTA
[ENA]
¡û
>W1711129196
LUTU01000013
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
147968
147883
-
Tyr
GTA
[ENA]
¡û
>W1711143173
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
305472
305557
+
Tyr
GTA
[ENA]
¡û
>W1711466232
MJME01000043
Alphaproteobacteria
Novacetimonas hansenii [MJME]
14131
14216
+
Tyr
GTA
[ENA]
¡û
>C171032975
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
888803
888888
+
Tyr
GTA
-
¡û
>C171033055
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2108985
2108900
-
Tyr
GTA
-
¡û
>C171033107
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
2510190
2510105
-
Tyr
GTA
-
¡û
>C171036231
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
2672768
2672853
+
Tyr
GTA
-
¡û
>W131240816
BAON01000025
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
20372
20287
-
Tyr
GTA
[ENA]
¡û
>W131241399
BARL01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
93483
93398
-
Tyr
GTA
[ENA]
¡û
>C000477
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
89466
89551
+
Tyr
GTA
[Ensembl]
¡û
>C010077
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
524075
523990
-
Tyr
GTA
[Ensembl]
¡û
>WENV180344167
OBLK01257028
[OBLK] soil metagenome; Clay
348
263
-
Tyr
GTA
[ENA]
¢þ
>W141195228
AYTY01000016
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
40508
40423
-
Tyr
GTA
[ENA]
¡û
>W141200341
AYXS01000004
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
24462
24377
-
Tyr
GTA
[ENA]
¡û
>W141224611
BAIO01000168
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
4293
4208
-
Tyr
GTA
[ENA]
¡û
>W141226085
BAJT01000019
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
20996
20911
-
Tyr
GTA
[ENA]
¡û
>W141226177
BAJV01000017
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
22444
22359
-
Tyr
GTA
[ENA]
¡û
>W141227273
BAKW01000019
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
27436
27351
-
Tyr
GTA
[ENA]
¡û
>W141229923
BASM01000009
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
20376
20291
-
Tyr
GTA
[ENA]
¡û
>W141247920
CBLX010000004
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
21707
21792
+
Tyr
GTA
[ENA]
¡û
>W141462229
JFHO01000004
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
244610
244695
+
Tyr
GTA
[ENA]
¡û
>W09105121
AAOO01000011
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
59194
59279
+
Tyr
GTA
[ENA]
¡û
>C181077160
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
2034335
2034420
+
Tyr
GTA
-
¡û
>C181221225
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
524084
523999
-
Tyr
GTA
-
¡û
>C191090657
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
2062302
2062387
+
Tyr
GTA
-
¡û
>C191157795
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
464991
465076
+
Tyr
GTA
-
¡û
>W141726105
JNAB01000028
Alphaproteobacteria
Kozakia baliensis [JNAB]
103110
103025
-
Tyr
GTA
[ENA]
¡û
>W1910008285
BDEY01000024
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
9223
9138
-
Tyr
GTA
[ENA]
¡û
>W1910015215
BDLU01000042
Alphaproteobacteria
Komagataeibacter diospyri MSKU9 [BDLU]
9497
9582
+
Tyr
GTA
[ENA]
¡û
>W1910015263
BDLW01000021
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
9428
9513
+
Tyr
GTA
[ENA]
¡û
>W1910181406
BJLY01000004
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
82013
82098
+
Tyr
GTA
[ENA]
¡û
>W1910181858
BJMK01000003
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
179981
180066
+
Tyr
GTA
[ENA]
¡û
>W1910183154
BJNM01000001
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
190015
190100
+
Tyr
GTA
[ENA]
¡û
>W1910183239
BJNN01000173
Alphaproteobacteria
Novacetimonas hansenii NBRC 14820 [BJNN]
1583
1668
+
Tyr
GTA
[ENA]
¡û
>W1910972042
NKCY01000004
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
49805
49720
-
Tyr
GTA
[ENA]
¡û
>W1911138399
NOXG01000007
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
22661
22576
-
Tyr
GTA
[ENA]
¡û
>W1911597842
PNQZ01000063
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
21023
20938
-
Tyr
GTA
[ENA]
¡û
>W1810000596
BEWL01000002
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
164492
164577
+
Tyr
GTA
[ENA]
¡û
>W1810000673
BEWM01000005
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
26021
26106
+
Tyr
GTA
[ENA]
¡û
>W1810000696
BEWN01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
635929
636014
+
Tyr
GTA
[ENA]
¡û
>W1810000742
BEWO01000003
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
56236
56151
-
Tyr
GTA
[ENA]
¡û
>W1810000810
BEWP01000008
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
61344
61429
+
Tyr
GTA
[ENA]
¡û
>C151006215
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
646742
646657
-
Tyr
GTA
[Ensembl]
¡û
>C151091096
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
1719749
1719664
-
Tyr
GTA
[Ensembl]
¡û
>C10100977
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
889012
888927
-
Tyr
GTA
[Ensembl]
¡û
>C11100936
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
120710
120795
+
Tyr
GTA
[Ensembl]
¡û
>W1511620431
LCTG01000002
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
1281052
1281137
+
Tyr
GTA
[ENA]
¡û
>W11170630
AFPR01000150
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
17520
17435
-
Tyr
GTA
[ENA]
¡û
>W11179018
AGFR01000007
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
459171
459256
+
Tyr
GTA
[ENA]
¡û
>W11186922
CADS01000110
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
3667
3752
+
Tyr
GTA
[ENA]
¡û
>W11186970
CADT01000022
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
7522
7437
-
Tyr
GTA
[ENA]
¡û
>C161001115
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
530196
530111
-
Tyr
GTA
[Ensembl]
¡û
>C161096044
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
246185
246100
-
Tyr
GTA
-
¡û
>W121016340
AGQV01000010
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
303012
302927
-
Tyr
GTA
[ENA]
¡û
>W121034257
AHKI01000014
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
30656
30571
-
Tyr
GTA
[ENA]
¡û
>W121123431
BADZ01000013
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
71059
71144
+
Tyr
GTA
[ENA]
¡û
>W1610040643
BALE01000003
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
70900
70985
+
Tyr
GTA
[ENA]
¡û
>W1610040949
BANA01000037
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
2850
2765
-
Tyr
GTA
[ENA]
¡û
>W1610041180
BANG01000018
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
71537
71622
+
Tyr
GTA
[ENA]
¡û
>W1610041210
BANH01000009
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
20332
20247
-
Tyr
GTA
[ENA]
¡û
>W1610076850
BCZB01000010
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
20764
20679
-
Tyr
GTA
[ENA]
¡û
>W1610187975
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
2910904
2910989
+
Tyr
GTA
[ENA]
¡û
>C131009945
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1631446
1631531
+
Tyr
GTA
[Ensembl]
¡û
>W1610624042
LHZB01000120
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
227128
227213
+
Tyr
GTA
[ENA]
¡û
>W1610624140
LHZD01000019
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
9231
9146
-
Tyr
GTA
[ENA]
¡û
>W1610624177
LHZE01000081
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
157420
157505
+
Tyr
GTA
[ENA]
¡û
>W1610624251
LHZG01000107
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
1777
1692
-
Tyr
GTA
[ENA]
¡û
>W1610624298
LHZH01000097
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
2354
2269
-
Tyr
GTA
[ENA]
¡û
>W1610624367
LHZI01001633
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
98
13
-
Tyr
GTA
[ENA]
¡û
>W1610624380
LHZJ01000016
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
97
182
+
Tyr
GTA
[ENA]
¡û
>W1610624455
LHZK01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
73959
74044
+
Tyr
GTA
[ENA]
¡û
>W1610624487
LHZL01000146
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
29528
29443
-
Tyr
GTA
[ENA]
¡û
>W1610624557
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
29622
29537
-
Tyr
GTA
[ENA]
¡û
>W1610624579
LHZN01000125
Alphaproteobacteria
Gluconobacter albidus [LHZN]
43843
43758
-
Tyr
GTA
[ENA]
¡û
>W1610624636
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
232418
232503
+
Tyr
GTA
[ENA]
¡û
>W1610624667
LHZP01000020
Alphaproteobacteria
Gluconobacter roseus [LHZP]
82024
82109
+
Tyr
GTA
[ENA]
¡û
>W1610624768
LHZR01000109
Alphaproteobacteria
Gluconobacter albidus [LHZR]
10241
10156
-
Tyr
GTA
[ENA]
¡û
>W1610624798
LHZS01000084
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
30420
30505
+
Tyr
GTA
[ENA]
¡û
>W1610625000
LHZW01000054
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
33763
33678
-
Tyr
GTA
[ENA]
¡û
>W1610940269
LUTU01000013
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
147968
147883
-
Tyr
GTA
[ENA]
¡û
>W1610954181
LVHE01000002
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
305472
305557
+
Tyr
GTA
[ENA]
¡û
>W1710037841
BALE01000003
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
70900
70985
+
Tyr
GTA
[ENA]
¡û
>W1710038147
BANA01000037
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
2850
2765
-
Tyr
GTA
[ENA]
¡û
>W1710038378
BANG01000018
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
71537
71622
+
Tyr
GTA
[ENA]
¡û
>W1710038408
BANH01000009
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
20332
20247
-
Tyr
GTA
[ENA]
¡û
>W1710074539
BCZB01000010
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
20764
20679
-
Tyr
GTA
[ENA]
¡û
>W1710189591
FBVP01000001
Alphaproteobacteria
Novacetimonas hansenii xylinus [FBVP]
2910904
2910989
+
Tyr
GTA
[ENA]
¡û
>W1710624305
JOMN01000015
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
170702
170787
+
Tyr
GTA
[ENA]
¡û
>W1710624354
JOMO01000031
Alphaproteobacteria
Acetobacter orientalis [JOMO]
26177
26262
+
Tyr
GTA
[ENA]
¡û
>W1710624663
JOPD01000002
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
212211
212126
-
Tyr
GTA
[ENA]
¡û
>W1710624708
JOPF01000002
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
167040
167125
+
Tyr
GTA
[ENA]
¡û
>W1710624812
JOPH01000036
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
26490
26575
+
Tyr
GTA
[ENA]
¡û
>W1710624851
JOPI01000031
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
1469
1554
+
Tyr
GTA
[ENA]
¡û
>W1710755160
LHZB01000120
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
227128
227213
+
Tyr
GTA
[ENA]
¡û
>W1710755258
LHZD01000019
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
9231
9146
-
Tyr
GTA
[ENA]
¡û
>W1710755295
LHZE01000081
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
157420
157505
+
Tyr
GTA
[ENA]
¡û
>W1710755369
LHZG01000107
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
1777
1692
-
Tyr
GTA
[ENA]
¡û
>W1710755416
LHZH01000097
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
2354
2269
-
Tyr
GTA
[ENA]
¡û
>W1710755485
LHZI01001633
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
98
13
-
Tyr
GTA
[ENA]
¡û
>W1710755498
LHZJ01000016
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
97
182
+
Tyr
GTA
[ENA]
¡û
>W1710755573
LHZK01000124
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
73959
74044
+
Tyr
GTA
[ENA]
¡û
>W1710755605
LHZL01000146
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
29528
29443
-
Tyr
GTA
[ENA]
¡û
>W1710755675
LHZM01000089
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
29622
29537
-
Tyr
GTA
[ENA]
¡û
>W1710755697
LHZN01000125
Alphaproteobacteria
Gluconobacter albidus [LHZN]
43843
43758
-
Tyr
GTA
[ENA]
¡û
>W1710755754
LHZO01000061
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
232418
232503
+
Tyr
GTA
[ENA]
¡û
>W1710755785
LHZP01000020
Alphaproteobacteria
Gluconobacter roseus [LHZP]
82024
82109
+
Tyr
GTA
[ENA]
¡û
>W1710755886
LHZR01000109
Alphaproteobacteria
Gluconobacter albidus [LHZR]
10241
10156
-
Tyr
GTA
[ENA]
¡û
>W1710755916
LHZS01000084
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
30420
30505
+
Tyr
GTA
[ENA]
¡û
>W1710756118
LHZW01000054
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
33763
33678
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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