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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80861 (59 seq.)
>W1710859235
LMBZ01000010
Bacillota
Solibacillus cecembensis [LMBZ]
320
235
-
Leu
GAG
[ENA]
¡û
>W1710859280
LMCA01000019
Bacillota
Siminovitchia farraginis [LMCA]
93435
93520
+
Leu
GAG
[ENA]
¡û
>W1711020378
LQYN01000174
Bacillota
Heyndrickxia sporothermodurans [LQYN]
23851
23936
+
Leu
GAG
[ENA]
¡û
>W1711020753
LQYT01000140
Bacillota
Caldibacillus debilis [LQYT]
66348
66266
-
Leu
GAG
[ENA]
¡û
>W1711047894
LRPG01000086
Bacillota
Priestia megaterium [LRPG]
51495
51580
+
Leu
GAG
[ENA]
¡û
>W1711356937
MDGU01000023
Bacillota
Lysinibacillus sp. AR18-8 [MDGU]
272445
272530
+
Leu
GAG
[ENA]
¡û
>W1711603258
MOLV01000005
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
299
214
-
Leu
GAG
[ENA]
¡û
>W1711603311
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
482
399
-
Leu
GAG
[ENA]
¡û
>W1711624422
MPHG01000396
Bacillota
Bacillus obstructivus VT-16-70 [MPHG]
140
225
+
Leu
GAG
[ENA]
¡û
>W1711722892
MTLA01000072
Bacillota
Heyndrickxia oleronia oleronius [MTLA]
426
511
+
Leu
GAG
[ENA]
¡û
>W1711794405
MWMM01000005
Bacillota
Bacillus badius encimensis [MWMM]
178330
178416
+
Leu
GAG
[ENA]
¡û
>PL171001077
CP015440
Firmicutes
Anoxybacillus amylolyticus DSM 15939 plasmid:pDSM15939_2
64312
64394
+
Leu
GAG
[ENA]
¡û
>C171085856
CP018874
Bacillota
Priestia megaterium JX285 [CP018874]
210217
210302
+
Leu
GAG
-
¡û
>W131185945
ARVR01000001
Bacillota
Caldibacillus debilis DSM 16016 [ARVR]
243630
243548
-
Leu
GAG
[ENA]
¡û
>W141011669
AHTF01000011
Bacillota
Priestia megaterium NCT-2 [AHTF]
170
255
+
Leu
GAG
[ENA]
¡û
>w003704
AADW02000048
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
307
394
+
Leu
GAG
[ENA]
¡û
>w003698
AADW02000036
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
14199
14286
+
Leu
GAG
[ENA]
¡û
>w003667
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
2292
2379
+
Leu
GAG
[ENA]
¡û
>W141053581
ANOC01000148
Bacillota
Anoxybacillus ayderensis SK3-4 [ANOC]
451
366
-
Leu
GAG
[ENA]
¡û
>W141193582
AYSE01000019
Bacillota
Bacillus sp. FJAT-14578 [AYSE]
141
56
-
Leu
GAG
[ENA]
¡û
>W141279699
JAGM01000045
Bacillota
Heyndrickxia ginsengihumi J57 [JAGM]
5339
5257
-
Leu
GAG
[ENA]
¡û
>C08004778
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
35325
35408
+
Leu
GAG
[Ensembl]
¡û
>C08004827
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
2789559
2789477
-
Leu
GAG
[Ensembl]
¡û
>WENV170023054
BCQK01112311
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
84
1
-
Leu
GAG
[ENA]
¢þ
>C181061977
CP022315
Bacillota
Virgibacillus phasianinus LM2416 [CP022315]
621992
621909
-
Leu
GAG
-
¡û
>C181095477
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
3980773
3980688
-
Leu
GAG
-
¡û
>C181171365
CP029002
Bacillota
Lysinibacillus sp. 2017 [CP029002]
3453868
3453783
-
Leu
GAG
-
¡û
>W141563051
JHZS01000001
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
256633
256718
+
Leu
GAG
[ENA]
¡û
>W141563161
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
346
263
-
Leu
GAG
[ENA]
¡û
>W141563174
JHZU01000004
Bacillota
Exiguobacterium undae 190-11 [JHZU]
268389
268474
+
Leu
GAG
[ENA]
¡û
>W141563222
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
357
274
-
Leu
GAG
[ENA]
¡û
>W141563232
JHZV01000003
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
285566
285651
+
Leu
GAG
[ENA]
¡û
>W141701498
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1440045
1440128
+
Leu
GAG
[ENA]
¡û
>W141701527
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1154507
1154422
-
Leu
GAG
[ENA]
¡û
>W141730987
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600971
1601054
+
Leu
GAG
[ENA]
¡û
>W141731036
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1311364
1311279
-
Leu
GAG
[ENA]
¡û
>W141789824
JOTN01000096
Bacillota
Bacillus manliponensis [JOTN]
40
125
+
Leu
GAG
[ENA]
¡û
>W1910006344
AZRV01000046
Bacillota
Caldibacillus debilis GB1 [AZRV]
33534
33452
-
Leu
GAG
[ENA]
¡û
>W1910843107
NAZA01000064
Bacillota
Heyndrickxia sporothermodurans SA01 [NAZA]
19952
20037
+
Leu
GAG
[ENA]
¡û
>W1910843224
NAZB01000023
Bacillota
Heyndrickxia sporothermodurans SAD [NAZB]
212355
212440
+
Leu
GAG
[ENA]
¡û
>W1910843322
NAZC01000278
Bacillota
Heyndrickxia sporothermodurans BR12 [NAZC]
495
410
-
Leu
GAG
[ENA]
¡û
>W1910843399
NAZD01000104
Bacillota
Heyndrickxia sporothermodurans DSM 10599 [NAZD]
778
693
-
Leu
GAG
[ENA]
¡û
>W1910926837
NIJF01000052
Bacillota
Bacillus sp. P14.5 [NIJF]
60744
60829
+
Leu
GAG
[ENA]
¡û
>W1911770376
QXIR01000016
Bacillota
Bacillus salacetis SKP7-4 [QXIR]
105623
105708
+
Leu
GAG
[ENA]
¡û
>W1911770677
QXJB01000003
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
273066
273151
+
Leu
GAG
[ENA]
¡û
>W1911770706
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
257
174
-
Leu
GAG
[ENA]
¡û
>W1810760541
QPKF01000002
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
381
296
-
Leu
GAG
[ENA]
¡û
>W1810760569
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
792
875
+
Leu
GAG
[ENA]
¡û
>C151038822
CP008855
Bacillota
Bacillus sp. X1[2014] [CP008855]
2187549
2187634
+
Leu
GAG
[Ensembl]
¡û
>W1511356587
JRUN01000050
Bacillota
Heyndrickxia ginsengihumi M2.11 [JRUN]
24127
24209
+
Leu
GAG
[ENA]
¡û
>C131001794
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
35238
35321
+
Leu
GAG
[Ensembl]
¡û
>C131001840
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
2579358
2579273
-
Leu
GAG
[Ensembl]
¡û
>W1610721581
LMBZ01000010
Bacillota
Solibacillus cecembensis [LMBZ]
320
235
-
Leu
GAG
[ENA]
¡û
>W1610721626
LMCA01000019
Bacillota
Siminovitchia farraginis [LMCA]
93435
93520
+
Leu
GAG
[ENA]
¡û
>W1610868666
LQYN01000174
Bacillota
Heyndrickxia sporothermodurans [LQYN]
23851
23936
+
Leu
GAG
[ENA]
¡û
>W1610869041
LQYT01000140
Bacillota
Caldibacillus debilis [LQYT]
66348
66266
-
Leu
GAG
[ENA]
¡û
>W1610889023
LRPG01000086
Bacillota
Priestia megaterium [LRPG]
51495
51580
+
Leu
GAG
[ENA]
¡û
>W1710547101
FOCR01000004
Bacillota
Lysinibacillus fusiformis SG45 [FOCR]
395
310
-
Leu
GAG
[ENA]
¡û
>W1710576056
FOZT01000005
Bacillota
Lysinibacillus fusiformis BC-43 [FOZT]
396
311
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK