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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.80954 (91 seq.)
>W1710934749
LOJN01000039
Bacillota
Lacticaseibacillus casei [LOJN]
18
103
+
Leu
TAG
[ENA]
¡û
>W131062305
ANJS01000006
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp219 [ANJS]
68724
68640
-
Leu
TAG
[ENA]
¡û
>W131062412
ANJU01000057
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp74 [ANJU]
16892
16808
-
Leu
TAG
[ENA]
¡û
>W131062518
ANJX01000044
Bacillota
Lacticaseibacillus paracasei subsp. paracasei CNCM I-4270 [ANJX]
17
101
+
Leu
TAG
[ENA]
¡û
>W131062572
ANJY01000040
Bacillota
Lacticaseibacillus paracasei subsp. paracasei Lpp189 [ANJY]
17
101
+
Leu
TAG
[ENA]
¡û
>W131063409
ANKV01000017
Bacillota
Lacticaseibacillus paracasei subsp. tolerans Lpl7 [ANKV]
65352
65268
-
Leu
TAG
[ENA]
¡û
>W1711093159
LTET01000094
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
16212
16128
-
Leu
TAG
[ENA]
¡û
>W1711097437
LTIR01000074
Bacillota
Lactobacillus sp. HMSC077C11 [LTIR]
183
99
-
Leu
TAG
[ENA]
¡û
>W1711098166
LTJI01000104
Bacillota
Lactobacillus sp. HMSC068B07 [LTJI]
49
133
+
Leu
TAG
[ENA]
¡û
>W1711107569
LTSY01000014
Bacillota
Lactobacillus sp. HMSC073D04 [LTSY]
49
133
+
Leu
TAG
[ENA]
¡û
>W1711299224
MAGA01000039
Bacillota
Lacticaseibacillus rhamnosus [MAGA]
212
296
+
Leu
TAG
[ENA]
¡û
>W1711299245
MAGA01000079
Bacillota
Lacticaseibacillus rhamnosus [MAGA]
1450
1534
+
Leu
TAG
[ENA]
¡û
>W1711461625
MJHB01000010
Bacillota
Lacticaseibacillus rhamnosus [MJHB]
35
119
+
Leu
TAG
[ENA]
¡û
>W1711588902
MODS01000003
Bacillota
Lacticaseibacillus casei [MODS]
220
136
-
Leu
TAG
[ENA]
¡û
>W1711629106
MPOP01000041
Bacillota
Lacticaseibacillus casei [MPOP]
20912
20828
-
Leu
TAG
[ENA]
¡û
>W1711708121
MSTC01000009
Bacillota
Lacticaseibacillus rhamnosus [MSTC]
60184
60100
-
Leu
TAG
[ENA]
¡û
>W1711961627
NCSO01000034
Bacillota
Lacticaseibacillus paracasei [NCSO]
78446
78362
-
Leu
TAG
[ENA]
¡û
>W1711999807
NDXH01000003
Bacillota
Lacticaseibacillus paracasei [NDXH]
221
305
+
Leu
TAG
[ENA]
¡û
>C171034601
CP014985
Bacillota
Lacticaseibacillus paracasei IIA [CP014985]
2318159
2318243
+
Leu
TAG
-
¡û
>C171051631
CP016823
Bacillota
Lacticaseibacillus rhamnosus LRB [CP016823]
2207170
2207086
-
Leu
TAG
-
¡û
>W141004412
AFYK01000042
Bacillota
Lacticaseibacillus casei 1·î21Æü [AFYK]
30471
30387
-
Leu
TAG
[ENA]
¡û
>W141004590
AFYO01000023
Bacillota
Lacticaseibacillus paracasei M36 [AFYO]
46195
46111
-
Leu
TAG
[ENA]
¡û
>WENV180136866
OATN01022252
[OATN] human gut metagenome; faeces
70
154
+
Leu
TAG
[ENA]
¢þ
>WENV180137627
OATP01000096
[OATP] human gut metagenome; faeces
60904
60820
-
Leu
TAG
[ENA]
¢þ
>WENV180412347
OBVA01000871
[OBVA] human gut metagenome; faeces
11568
11484
-
Leu
TAG
[ENA]
¢þ
>WENV180419941
OBVO01000116
[OBVO] human gut metagenome; faeces
57374
57290
-
Leu
TAG
[ENA]
¢þ
>WENV180432336
OBWI01000952
[OBWI] human gut metagenome; faeces
201
285
+
Leu
TAG
[ENA]
¢þ
>WENV180452940
OBXK01006280
[OBXK] human gut metagenome; faeces
204
120
-
Leu
TAG
[ENA]
¢þ
>W141228162
BALS01000045
Bacillota
Lacticaseibacillus casei JCM 1134 [BALS]
15
100
+
Leu
TAG
[ENA]
¡û
>WENV182943998
OKVI01002104
[OKVI] human gut metagenome; human gut
2848
2932
+
Leu
TAG
[ENA]
¢þ
>C191001803
AP018392
Bacillota
Lacticaseibacillus paracasei IJH-SONE68 [AP018392]
2670581
2670497
-
Leu
TAG
-
¡û
>C191034468
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
2562456
2562372
-
Leu
TAG
-
¡û
>W09110959
ABWJ01000023
Bacillota
Lacticaseibacillus rhamnosus HN001 [ABWJ]
15
99
+
Leu
TAG
[ENA]
¡û
>W09123449
ACGY01000091
Bacillota
Lacticaseibacillus paracasei subsp. paracasei ATCC 25302 [ACGY]
177
261
+
Leu
TAG
[ENA]
¡û
>W141811549
JPZB01000024
Bacillota
Lacticaseibacillus rhamnosus [JPZB]
44175
44091
-
Leu
TAG
[ENA]
¡û
>W1910583951
JXRK01000044
Bacillota
Lacticaseibacillus paracasei INF 456 [JXRK]
20912
20828
-
Leu
TAG
[ENA]
¡û
>W1910621208
LKFC01000008
Bacillota
Lacticaseibacillus paracasei FAM10859 [LKFC]
640010
639926
-
Leu
TAG
[ENA]
¡û
>W1910621326
LKFE01000006
Bacillota
Lacticaseibacillus paracasei FAM18101 [LKFE]
597506
597422
-
Leu
TAG
[ENA]
¡û
>W1910621433
LKFG01000053
Bacillota
Lacticaseibacillus paracasei FAM18108 [LKFG]
78089
78005
-
Leu
TAG
[ENA]
¡û
>W1910621920
LKFP01000082
Bacillota
Lacticaseibacillus paracasei FAM18132 [LKFP]
50136
50052
-
Leu
TAG
[ENA]
¡û
>W1910622834
LKGG01000029
Bacillota
Lacticaseibacillus paracasei FAM3257 [LKGG]
545364
545280
-
Leu
TAG
[ENA]
¡û
>W1910622980
LKGJ01000027
Bacillota
Lacticaseibacillus paracasei FAM6161 [LKGJ]
116275
116191
-
Leu
TAG
[ENA]
¡û
>W1910623151
LKGM01000044
Bacillota
Lacticaseibacillus paracasei FAM7821 [LKGM]
118975
118891
-
Leu
TAG
[ENA]
¡û
>W1911118086
NOKL01000002
Bacillota
Lacticaseibacillus paracasei Lpc-37 [NOKL]
1414279
1414195
-
Leu
TAG
[ENA]
¡û
>W1911161600
NPOB01000118
Bacillota
Lacticaseibacillus paracasei subsp. paracasei NTU 101 [NPOB]
110824
110740
-
Leu
TAG
[ENA]
¡û
>W1810452813
PZQM01000023
Bacillota
Lacticaseibacillus rhamnosus LR2 [PZQM]
34
118
+
Leu
TAG
[ENA]
¡û
>W1810472563
QAGX01000005
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
297
381
+
Leu
TAG
[ENA]
¡û
>W1810473918
QAHU01000014
Bacillota
Lactobacillus sp. DS2_6 [QAHU]
78118
78034
-
Leu
TAG
[ENA]
¡û
>W1810488433
QAZJ01000009
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
297
381
+
Leu
TAG
[ENA]
¡û
>W1810489445
QBAA01000015
Bacillota
Lactobacillus sp. DS13_6 [QBAA]
78118
78034
-
Leu
TAG
[ENA]
¡û
>W1810706168
QMJW01000041
Bacillota
Lacticaseibacillus paracasei KMB_623 [QMJW]
20820
20736
-
Leu
TAG
[ENA]
¡û
>C10108992
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
2544606
2544522
-
Leu
TAG
[Ensembl]
¡û
>W1511435271
JUIN01000676
Bacillota
Lacticaseibacillus rhamnosus Lr032 [JUIN]
15
99
+
Leu
TAG
[ENA]
¡û
>W1511439939
JUON01000064
Bacillota
Lacticaseibacillus rhamnosus 906_LRHA [JUON]
75
159
+
Leu
TAG
[ENA]
¡û
>W1511440310
JUPA01000107
Bacillota
Lacticaseibacillus rhamnosus 893_LRHA [JUPA]
78
162
+
Leu
TAG
[ENA]
¡û
>W1511441013
JUPZ01000026
Bacillota
Lacticaseibacillus casei 867_LCAS [JUPZ]
213
128
-
Leu
TAG
[ENA]
¡û
>W1511441717
JUQW01000033
Bacillota
Lacticaseibacillus paracasei 844_LCAS [JUQW]
217
133
-
Leu
TAG
[ENA]
¡û
>W1511458133
JVIZ01000095
Bacillota
Lacticaseibacillus rhamnosus 390_LRHA [JVIZ]
194
110
-
Leu
TAG
[ENA]
¡û
>W1511478305
JWHC01000008
Bacillota
Lacticaseibacillus rhamnosus 308 [JWHC]
390
474
+
Leu
TAG
[ENA]
¡û
>W11184943
BACQ01000061
Bacillota
Lacticaseibacillus zeae KCTC 3804 [BACQ]
31689
31604
-
Leu
TAG
[ENA]
¡û
>W121007294
AFZY01000039
Bacillota
Lacticaseibacillus rhamnosus ATCC 21052 [AFZY]
4095
4011
-
Leu
TAG
[ENA]
¡û
>W1610032143
AYZJ01000093
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [AYZJ]
39174
39090
-
Leu
TAG
[ENA]
¡û
>W1610032930
AZCO01000050
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
12360
12276
-
Leu
TAG
[ENA]
¡û
>W1610034007
AZDJ01000030
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [AZDJ]
395783
395698
-
Leu
TAG
[ENA]
¡û
>W1610044214
BBAJ01000071
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [BBAJ]
94
178
+
Leu
TAG
[ENA]
¡û
>W1610044349
BBAM01000014
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
23
108
+
Leu
TAG
[ENA]
¡û
>C131015556
CP005486
Bacillota
Lacticaseibacillus paracasei LOCK919 [CP005486]
2686997
2686913
-
Leu
TAG
[Ensembl]
¡û
>W1610543360
JTHS01000023
Bacillota
Lacticaseibacillus rhamnosus [JTHS]
171
255
+
Leu
TAG
[ENA]
¡û
>W1610543409
JTHT01000018
Bacillota
Lacticaseibacillus rhamnosus [JTHT]
50361
50277
-
Leu
TAG
[ENA]
¡û
>W1610543476
JTHU01000116
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
59173
59089
-
Leu
TAG
[ENA]
¡û
>W1610543568
JTHW01000024
Bacillota
Lacticaseibacillus rhamnosus [JTHW]
340
424
+
Leu
TAG
[ENA]
¡û
>W1610543912
JTID01000041
Bacillota
Lacticaseibacillus rhamnosus [JTID]
19099
19015
-
Leu
TAG
[ENA]
¡û
>W1610544224
JTIJ01000025
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
389
473
+
Leu
TAG
[ENA]
¡û
>W1610544531
JTIP01000131
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
100
184
+
Leu
TAG
[ENA]
¡û
>W1610547441
JUIR01000597
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
389
473
+
Leu
TAG
[ENA]
¡û
>W1610547481
JUIS01001034
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
331
247
-
Leu
TAG
[ENA]
¡û
>WENV086546
BABG01000027
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
263
176
-
Leu
TAG
[ENA]
>W1710029070
AYZJ01000093
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [AYZJ]
39174
39090
-
Leu
TAG
[ENA]
¡û
>W1710030261
AZCO01000050
Bacillota
Lacticaseibacillus casei DSM 20011 = JCM 1134 [AZCO]
12360
12276
-
Leu
TAG
[ENA]
¡û
>W1710031134
AZDJ01000030
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [AZDJ]
395783
395698
-
Leu
TAG
[ENA]
¡û
>W1710041374
BBAJ01000071
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [BBAJ]
94
178
+
Leu
TAG
[ENA]
¡û
>W1710041509
BBAM01000014
Bacillota
Lacticaseibacillus nasuensis JCM 17158 [BBAM]
23
108
+
Leu
TAG
[ENA]
¡û
>W1710646491
JTHS01000023
Bacillota
Lacticaseibacillus rhamnosus [JTHS]
171
255
+
Leu
TAG
[ENA]
¡û
>W1710646540
JTHT01000018
Bacillota
Lacticaseibacillus rhamnosus [JTHT]
50361
50277
-
Leu
TAG
[ENA]
¡û
>W1710646607
JTHU01000116
Bacillota
Lacticaseibacillus rhamnosus [JTHU]
59173
59089
-
Leu
TAG
[ENA]
¡û
>W1710646699
JTHW01000024
Bacillota
Lacticaseibacillus rhamnosus [JTHW]
340
424
+
Leu
TAG
[ENA]
¡û
>W1710647043
JTID01000041
Bacillota
Lacticaseibacillus rhamnosus [JTID]
19099
19015
-
Leu
TAG
[ENA]
¡û
>W1710647355
JTIJ01000025
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
389
473
+
Leu
TAG
[ENA]
¡û
>W1710647662
JTIP01000131
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
100
184
+
Leu
TAG
[ENA]
¡û
>W1710650624
JUIR01000597
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
389
473
+
Leu
TAG
[ENA]
¡û
>W1710650664
JUIS01001034
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
331
247
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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