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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81005 (30 seq.)
>W1711326821
MBGA01000015
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus [MBGA]
61317
61232
-
Leu
TAA
[ENA]
¡û
>W1711350432
MCRK01000041
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRK]
64472
64387
-
Leu
TAA
[ENA]
¡û
>W1711350470
MCRL01000023
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum [MCRL]
64935
65020
+
Leu
TAA
[ENA]
¡û
>W1711351843
MDCT01000006
Campylobacterota
Campylobacter pinnipediorum RM18812 [MDCT]
61510
61425
-
Leu
TAA
[ENA]
¡û
>W1711351883
MDCU01000006
Campylobacterota
Campylobacter pinnipediorum RM18813 [MDCU]
25124
25209
+
Leu
TAA
[ENA]
¡û
>W1711351938
MDCV01000009
Campylobacterota
Campylobacter pinnipediorum RM18906 [MDCV]
45924
45839
-
Leu
TAA
[ENA]
¡û
>C171017240
CP012546
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17260 [CP012546]
1655717
1655802
+
Leu
TAA
-
¡û
>C171017284
CP012547
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17261 [CP012547]
1610374
1610459
+
Leu
TAA
-
¡û
>C171017328
CP012548
Campylobacterota
Campylobacter pinnipediorum subsp. pinnipediorum RM17262 [CP012548]
1504692
1504777
+
Leu
TAA
-
¡û
>C171055146
CP017018
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M302/10/6 [CP017018]
1566947
1567032
+
Leu
TAA
-
¡û
>C171059647
CP017258
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M341/11/05 [CP017258]
1618909
1618994
+
Leu
TAA
-
¡û
>WENV180709270
ODFJ01043945
[ODFJ] human metagenome; G_DNA_Tongue dorsum
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV180735399
ODGZ01207570
[ODGZ] human metagenome; G_DNA_Supragingival plaque
67
152
+
Leu
TAA
[ENA]
¢þ
>WENV180769149
ODIG01037688
[ODIG] human metagenome; G_DNA_Tongue dorsum
85
170
+
Leu
TAA
[ENA]
¢þ
>WENV180796591
ODJB01007640
[ODJB] human metagenome; G_DNA_Supragingival plaque
71
156
+
Leu
TAA
[ENA]
¢þ
>WENV180860559
ODLD01164149
[ODLD] human metagenome; G_DNA_Supragingival plaque
146
61
-
Leu
TAA
[ENA]
¢þ
>WENV180882749
ODMC01000465
[ODMC] human metagenome; G_DNA_Tongue dorsum
6397
6312
-
Leu
TAA
[ENA]
¢þ
>WENV180930805
ODTP01000416
[ODTP] human metagenome; G_DNA_Tongue dorsum
26984
27069
+
Leu
TAA
[ENA]
¢þ
>WENV180940123
ODTX01257219
[ODTX] human metagenome; G_DNA_Supragingival plaque
67
152
+
Leu
TAA
[ENA]
¢þ
>WENV180948138
ODUG01000327
[ODUG] human metagenome; G_DNA_Tongue dorsum
3608
3693
+
Leu
TAA
[ENA]
¢þ
>WENV180951343
ODUH01018345
[ODUH] human metagenome; G_DNA_Subgingival plaque
1675
1590
-
Leu
TAA
[ENA]
¢þ
>WENV180955158
ODUJ01038413
[ODUJ] human metagenome; G_DNA_Tongue dorsum
498
413
-
Leu
TAA
[ENA]
¢þ
>WENV181040616
ODXS01000334
[ODXS] human metagenome; G_DNA_Tongue dorsum
23693
23778
+
Leu
TAA
[ENA]
¢þ
>WENV181057286
ODYL01000019
[ODYL] human metagenome; G_DNA_Tongue dorsum
98904
98989
+
Leu
TAA
[ENA]
¢þ
>WENV181087649
OEAY01100742
[OEAY] human metagenome; G_DNA_Tongue dorsum
106
21
-
Leu
TAA
[ENA]
¢þ
>WENV181094181
OEBY01000011
[OEBY] human metagenome; G_DNA_Tongue dorsum
101339
101254
-
Leu
TAA
[ENA]
¢þ
>WENV181098120
OECA01089825
[OECA] human metagenome; G_DNA_Tongue dorsum
260
175
-
Leu
TAA
[ENA]
¢þ
>WENV181139352
OEGN01006789
[OEGN] human metagenome; G_DNA_Tongue dorsum
3878
3963
+
Leu
TAA
[ENA]
¢þ
>WENV181151589
OEHW01080539
[OEHW] human metagenome; G_DNA_Tongue dorsum
412
327
-
Leu
TAA
[ENA]
¢þ
>W141555954
JHQQ01000002
Campylobacterota
Campylobacter mucosalis [JHQQ]
144260
144345
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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