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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81010 (35 seq.)
>W1712104747
NIPZ01000021
Alphaproteobacteria
Paracoccus yeei [NIPZ]
194
109
-
Leu
TAA
[ENA]
¡û
>C171107657
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
1001664
1001749
+
Leu
TAA
-
¡û
>C016021
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
2057161
2057246
+
Leu
TAA
[Ensembl]
¡û
>WENV180285362
OBID01356342
[OBID] metagenome; sludge
170
255
+
Leu
TAA
[ENA]
¢þ
>W141277366
JAEN01000014
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
54654
54739
+
Leu
TAA
[ENA]
¡û
>W141279598
JAGK01000051
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
10899
10984
+
Leu
TAA
[ENA]
¡û
>WENV170564858
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
57060
57145
+
Leu
TAA
[ENA]
¢þ
>PL191000050
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
2057161
2057246
+
Leu
TAA
[Ensembl]
¡û
>C181099767
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
516443
516528
+
Leu
TAA
-
¡û
>C181117177
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
2186886
2186971
+
Leu
TAA
-
¡û
>C191073582
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2522531
2522616
+
Leu
TAA
-
¡û
>C191134371
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
798451
798536
+
Leu
TAA
-
¡û
>W141558888
JHWH01000047
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
9266
9351
+
Leu
TAA
[ENA]
¡û
>W09103069
AAIT01000012
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
92718
92633
-
Leu
TAA
[ENA]
¡û
>C141006335
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
3171876
3171961
+
Leu
TAA
[Ensembl]
¡û
>W1911245312
NSJZ01000001
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
193122
193037
-
Leu
TAA
[ENA]
¡û
>W1810235996
PPGA01000013
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
57865
57950
+
Leu
TAA
[ENA]
¡û
>W1810585333
QFCQ01000133
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
6607
6692
+
Leu
TAA
[ENA]
¡û
>W1810750747
QOZU01000075
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
12721
12636
-
Leu
TAA
[ENA]
¡û
>W1810759484
QPJL01000013
Alphaproteobacteria
Paracoccus lutimaris CECT 8525 [QPJL]
36504
36419
-
Leu
TAA
[ENA]
¡û
>W1810862257
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
735576
735491
-
Leu
TAA
[ENA]
¡û
>W1810884870
QUMX01000038
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
11618
11703
+
Leu
TAA
[ENA]
¡û
>C11117057
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
1594255
1594170
-
Leu
TAA
[Ensembl]
¡û
>W1511348559
JRKN01000016
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
61872
61957
+
Leu
TAA
[ENA]
¡û
>W121059999
AJFB01000172
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
83
168
+
Leu
TAA
[ENA]
¡û
>W1610049818
BBFH01000018
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4291
4376
+
Leu
TAA
[ENA]
¡û
>W1710046217
BBFH01000018
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
4291
4376
+
Leu
TAA
[ENA]
¡û
>W1710518476
FNEA01000024
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
9635
9550
-
Leu
TAA
[ENA]
¡û
>W1710521178
FNGE01000007
Alphaproteobacteria
Paracoccus chinensis [FNGE]
46819
46904
+
Leu
TAA
[ENA]
¡û
>W1710540927
FNXG01000001
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
202300
202385
+
Leu
TAA
[ENA]
¡û
>W1710555551
FOJO01000015
Alphaproteobacteria
Paracoccus halophilus [FOJO]
62006
62091
+
Leu
TAA
[ENA]
¡û
>W1710571582
FOWA01000045
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
13969
13884
-
Leu
TAA
[ENA]
¡û
>W1710574697
FOYK01000024
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
9668
9583
-
Leu
TAA
[ENA]
¡û
>W1710581782
FPKI01000042
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
31728
31643
-
Leu
TAA
[ENA]
¡û
>W1710596195
FTMK01000012
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
53332
53417
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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