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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81015 (31 seq.)
>W1710787517
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130674
130759
+
Tyr
GTA
[ENA]
¡û
>W131155627
AQOS01000049
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
20000
20085
+
Tyr
GTA
[ENA]
¡û
>W131177887
ARLD01000053
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
15981
16066
+
Tyr
GTA
[ENA]
¡û
>C171047202
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1255868
1255953
+
Tyr
GTA
-
¡û
>W131167534
ARDI01000019
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
15954
16039
+
Tyr
GTA
[ENA]
¡û
>W131218111
ATXJ01000018
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
728
643
-
Tyr
GTA
[ENA]
¡û
>WENV181404794
OGCB01000292
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
406
321
-
Tyr
GTA
[ENA]
¢þ
>WENV181408138
OGCH01000685
[OGCH] hot springs metagenome; hot springs
435
350
-
Tyr
GTA
[ENA]
¢þ
>W08011588
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
16437
16522
+
Tyr
GTA
[ENA]
¡û
>C191190021
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1568698
1568613
-
Tyr
GTA
-
¡û
>W141820751
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1809456
1809541
+
Tyr
GTA
[ENA]
¡û
>W1911578790
PELL01000055
Deinococcota
Thermus scotoductus 39_S39 [PELL]
502
417
-
Tyr
GTA
[ENA]
¡û
>W1911579020
PELQ01000014
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
5841
5926
+
Tyr
GTA
[ENA]
¡û
>W1911579089
PELR01000244
Deinococcota
Thermus scotoductus 32_S32 [PELR]
18237
18322
+
Tyr
GTA
[ENA]
¡û
>W1911579227
PELU01000144
Deinococcota
Thermus scotoductus 29_S29 [PELU]
18244
18329
+
Tyr
GTA
[ENA]
¡û
>W1911579283
PELV01000262
Deinococcota
Thermus scotoductus 28_S28 [PELV]
286
371
+
Tyr
GTA
[ENA]
¡û
>W1810889153
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
1402695
1402780
+
Tyr
GTA
[ENA]
¡û
>ENV09004163
ADKJ01000452
Hot springs metagenome ctg_1106445192081
2332
2417
+
Tyr
GTA
[ENA]
¡û
>C11114426
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
419077
419162
+
Tyr
GTA
[Ensembl]
¡û
>W1511312802
JPSL02000040
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
433526
433441
-
Tyr
GTA
[ENA]
¡û
>W1511401692
JTJB01000025
Deinococcota
Thermus sp. 2.9 [JTJB]
462
377
-
Tyr
GTA
[ENA]
¡û
>C11123037
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
150444
150529
+
Tyr
GTA
[Ensembl]
¡û
>C121006414
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2108176
2108091
-
Tyr
GTA
[Ensembl]
¡û
>C161028666
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
61569
61654
+
Tyr
GTA
-
¡û
>C161067121
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
26433
26348
-
Tyr
GTA
[Ensembl]
¡û
>W121056012
AIJQ01000001
Deinococcota
Thermus parvatiensis RL [AIJQ]
44123
44208
+
Tyr
GTA
[ENA]
¡û
>W1610045330
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
328
243
-
Tyr
GTA
[ENA]
¡û
>W1610045412
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
457
372
-
Tyr
GTA
[ENA]
¡û
>W1610651372
LJJR01000005
Deinococcota
Thermus scotoductus [LJJR]
130674
130759
+
Tyr
GTA
[ENA]
¡û
>W1710042171
BBBL01000217
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
328
243
-
Tyr
GTA
[ENA]
¡û
>W1710042253
BBBN01000187
Deinococcota
Thermus sp. JCM 17653 [BBBN]
457
372
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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