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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81037 (18 seq.)
>W1711434441
MIMZ01000026
Bacillota
[Butyribacterium] methylotrophicum [MIMZ]
320530
320615
+
Leu
CAG
[ENA]
¡û
>C171101812
CP019962
Bacillota
Eubacterium limosum ATCC 8486 [CP019962]
3915194
3915279
+
Leu
CAG
-
¡û
>WENV180176825
OAWD01001909
[OAWD] human gut metagenome; faeces
1195
1280
+
Leu
CAG
[ENA]
¢þ
>WENV180498249
OCAG01000027
[OCAG] human gut metagenome; faeces
45011
44926
-
Leu
CAG
[ENA]
¢þ
>WENV180504548
OCAN01006644
[OCAN] human gut metagenome; faeces
1193
1278
+
Leu
CAG
[ENA]
¢þ
>WENV181346595
OFML01045339
[OFML] human gut metagenome; human gut
197
112
-
Leu
CAG
[ENA]
¢þ
>WENV182403032
OIET01000535
[OIET] human gut metagenome; human gut
9992
10077
+
Leu
CAG
[ENA]
¢þ
>WENV182405220
OIEV01001431
[OIEV] human gut metagenome; human gut
9803
9718
-
Leu
CAG
[ENA]
¢þ
>C191064401
CP029487
Bacillota
Eubacterium maltosivorans YI [CP029487]
817616
817701
+
Leu
CAG
-
¡û
>C191219540
LR215983
Bacillota
Eubacterium limosum [LR215983]
1421716
1421631
-
Leu
CAG
-
¡û
>W1810609749
QGUD01000003
Bacillota
Eubacterium limosum 8486cho [QGUD]
265560
265475
-
Leu
CAG
[ENA]
¡û
>W1810871722
QUDF01000005
Bacillota
Eubacterium sp. AM05-23 [QUDF]
286188
286273
+
Leu
CAG
[ENA]
¡û
>C11108822
CP002273
Bacillota
Eubacterium callanderi KIST612 [CP002273]
2173103
2173188
+
Leu
CAG
[Ensembl]
¡û
>W1511480149
JWIS01000003
Bacillota
Eubacterium limosum ATCC 8480 [JWIS]
492205
492120
-
Leu
CAG
[ENA]
¡û
>C161037830
CP011914
Bacillota
Eubacterium limosum SA11 [CP011914]
1858851
1858766
-
Leu
CAG
[Ensembl]
¡û
>W1710525029
FNJF01000004
Bacillota
Eubacterium maltosivorans limosum [FNJF]
38451
38366
-
Leu
CAG
[ENA]
¡û
>W1710571961
FOWI01000004
Bacillota
Eubacterium callanderi [FOWI]
202880
202965
+
Leu
CAG
[ENA]
¡û
>W1710591292
FRBP01000006
Bacillota
Eubacterium callanderi [FRBP]
267878
267963
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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