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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81096 (43 seq.)
>W1711386720
MEFR01000129
Alphaproteobacteria
Acetobacteraceae bacterium SCN 69-10 [MEFR]
175
260
+
Leu
GAG
[ENA]
¡û
>W1711503706
MKTV01000065
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
154939
155024
+
Leu
GAG
[ENA]
¡û
>W1711506170
MKWE01000009
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
245533
245618
+
Leu
GAG
[ENA]
¡û
>C171033079
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
549900
549985
+
Leu
GAG
-
¡û
>W131043747
AMPS01000030
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
9854
9939
+
Leu
GAG
[ENA]
¡û
>W131164883
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
3413048
3412963
-
Leu
GAG
[ENA]
¡û
>C000506
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
2521546
2521461
-
Leu
GAG
[Ensembl]
¡û
>WENV180018094
FSYC01000653
[FSYC] metagenome; soil
2954
3038
+
Leu
GAG
[ENA]
¢þ
>W141082084
ATSX01000004
Alphaproteobacteria
Commensalibacter papalotli (ex Servin-Garciduenas et al. 2014) MX01 [ATSX]
26984
27069
+
Leu
GAG
[ENA]
¡û
>W141226094
BAJU01000001
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
110400
110485
+
Leu
GAG
[ENA]
¡û
>W141229583
BAND01000041
Alphaproteobacteria
Acidomonas methanolica NBRC 104435 [BAND]
3926
3841
-
Leu
GAG
[ENA]
¡û
>WENV183662760
ORJL010223471
[ORJL] groundwater metagenome; groundwater
1439
1354
-
Leu
GAG
[ENA]
¢þ
>WENV183667242
ORJL010628714
[ORJL] groundwater metagenome; groundwater
3852
3937
+
Leu
GAG
[ENA]
¢þ
>WENV183672982
ORJL011229937
[ORJL] groundwater metagenome; groundwater
586
501
-
Leu
GAG
[ENA]
¢þ
>WENV183677966
ORJL011818280
[ORJL] groundwater metagenome; groundwater
703
788
+
Leu
GAG
[ENA]
¢þ
>W141462262
JFHO01000081
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
9332
9247
-
Leu
GAG
[ENA]
¡û
>WENV170998865
MWWJ01135389
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
366
282
-
Leu
GAG
[ENA]
¢þ
>C181175683
CP029176
Alphaproteobacteria
Acidibrevibacterium fodinaquatile G45-3 [CP029176]
127742
127826
+
Leu
GAG
-
¡û
>W141561202
JHYG01000007
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
200792
200877
+
Leu
GAG
[ENA]
¡û
>W09105133
AAOO01000021
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
11927
12012
+
Leu
GAG
[ENA]
¡û
>W1910871839
NCXK01000001
Alphaproteobacteria
Acetobacter fabarum KR [NCXK]
142180
142095
-
Leu
GAG
[ENA]
¡û
>W1910872320
NDFO01000001
Alphaproteobacteria
Acetobacter syzygii KR-1 [NDFO]
312568
312653
+
Leu
GAG
[ENA]
¡û
>W1910872374
NDFP01000002
Alphaproteobacteria
Acetobacter syzygii KR-2 [NDFP]
312568
312653
+
Leu
GAG
[ENA]
¡û
>W1910913975
NHRY01000236
Alphaproteobacteria
Rhodopila globiformis DSM 161 [NHRY]
13240
13155
-
Leu
GAG
[ENA]
¡û
>W1911802547
QYUK01000008
Alphaproteobacteria
Oleomonas cavernae K1W22B-8 [QYUK]
404853
404768
-
Leu
GAG
[ENA]
¡û
>W1810053970
PDEU01000001
Alphaproteobacteria
Acetobacter fabarum OG2 [PDEU]
341079
341164
+
Leu
GAG
[ENA]
¡û
>W1810603358
QGLE01000005
Alphaproteobacteria
Zavarzinia aquatilis HR-AS [QGLE]
83213
83298
+
Leu
GAG
[ENA]
¡û
>W1810603428
QGLF01000007
Alphaproteobacteria
Zavarzinia compransoris DSM 1231 [QGLF]
81959
82044
+
Leu
GAG
[ENA]
¡û
>C11100964
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
2803381
2803296
-
Leu
GAG
[Ensembl]
¡û
>W11170644
AFPR01000458
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
3905
3990
+
Leu
GAG
[ENA]
¡û
>W11179033
AGFR01000014
Alphaproteobacteria
Commensalibacter intestini A911 [AGFR]
18872
18787
-
Leu
GAG
[ENA]
¡û
>W11184471
BABW01000548
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
114
29
-
Leu
GAG
[ENA]
¡û
>C161105563
LN609302
Alphaproteobacteria
Acetobacter ghanensis LMG 23848T [LN609302]
1540363
1540448
+
Leu
GAG
[Ensembl]
¡û
>W1610040919
BAMZ01000014
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
94661
94576
-
Leu
GAG
[ENA]
¡û
>W1610040980
BANA01000299
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
10724
10639
-
Leu
GAG
[ENA]
¡û
>W1610041063
BANC01000116
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
20096
20181
+
Leu
GAG
[ENA]
¡û
>W1710038117
BAMZ01000014
Alphaproteobacteria
Acetobacter syzygii 9H-2 [BAMZ]
94661
94576
-
Leu
GAG
[ENA]
¡û
>W1710038178
BANA01000299
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
10724
10639
-
Leu
GAG
[ENA]
¡û
>W1710038261
BANC01000116
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
20096
20181
+
Leu
GAG
[ENA]
¡û
>W1710584188
FQVJ01000004
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
42562
42477
-
Leu
GAG
[ENA]
¡û
>W1710624613
JOPB01000029
Alphaproteobacteria
Commensalibacter intestini [JOPB]
18978
18893
-
Leu
GAG
[ENA]
¡û
>W1710624678
JOPD01000007
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
86440
86525
+
Leu
GAG
[ENA]
¡û
>W1710624877
JOPJ01000006
Alphaproteobacteria
Acetobacter okinawensis [JOPJ]
320784
320869
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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