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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81194 (102 seq.)
>W1710861326
LMDN01000003
Actinomycetota
Leifsonia sp. Root4 [LMDN]
596458
596542
+
Leu
GAG
[ENA]
¡û
>W1710869666
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
182530
182614
+
Leu
GAG
[ENA]
¡û
>W1710870604
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
2191113
2191029
-
Leu
GAG
[ENA]
¡û
>W1710874998
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
182736
182820
+
Leu
GAG
[ENA]
¡û
>W1710876182
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
182550
182634
+
Leu
GAG
[ENA]
¡û
>W1710879761
LMRW01000023
Actinomycetota
Agromyces sp. Soil535 [LMRW]
243781
243865
+
Leu
GAG
[ENA]
¡û
>W1711173323
LWCT01000050
Actinomycetota
Plantibacter sp. H53 [LWCT]
65969
65885
-
Leu
GAG
[ENA]
¡û
>W1711461527
MJGW01000008
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
340331
340247
-
Leu
GAG
[ENA]
¡û
>WENV181313809
OFJH01009323
[OFJH] marine metagenome; seawater
473
389
-
Leu
GAG
[ENA]
¡û
>WENV182540433
OJAJ01001054
[OJAJ] seawater metagenome; Sea water
1899
1983
+
Leu
GAG
[ENA]
¡û
>WENV182540967
OJAQ01000925
[OJAQ] seawater metagenome; Sea water
2134
2218
+
Leu
GAG
[ENA]
¡û
>WENV182542831
OJAZ01003389
[OJAZ] seawater metagenome; Sea water
2735
2819
+
Leu
GAG
[ENA]
¡û
>WENV182545023
OJBL01003402
[OJBL] seawater metagenome; Sea water
467
383
-
Leu
GAG
[ENA]
¡û
>WENV182548477
OJBW01000501
[OJBW] seawater metagenome; Sea water
2250
2166
-
Leu
GAG
[ENA]
¡û
>WENV182550149
OJBZ01005800
[OJBZ] seawater metagenome; Sea water
2216
2300
+
Leu
GAG
[ENA]
¡û
>WENV182553146
OJCR01000118
[OJCR] seawater metagenome; Sea water
3914
3830
-
Leu
GAG
[ENA]
¡û
>WENV182554046
OJCT01000069
[OJCT] seawater metagenome; Sea water
3577
3493
-
Leu
GAG
[ENA]
¡û
>WENV182557033
OJDI01000422
[OJDI] seawater metagenome; Sea water
16572
16656
+
Leu
GAG
[ENA]
¡û
>WENV182561617
OJDX01000099
[OJDX] seawater metagenome; Sea water
11881
11965
+
Leu
GAG
[ENA]
¡û
>WENV182561899
OJDY01000002
[OJDY] seawater metagenome; Sea water
140613
140697
+
Leu
GAG
[ENA]
¡û
>WENV182562633
OJEA01000001
[OJEA] seawater metagenome; Sea water
56821
56905
+
Leu
GAG
[ENA]
¡û
>WENV182563054
OJEB01000021
[OJEB] seawater metagenome; Sea water
32165
32249
+
Leu
GAG
[ENA]
¡û
>WENV182564068
OJEE01000037
[OJEE] seawater metagenome; Sea water
2903
2819
-
Leu
GAG
[ENA]
¡û
>WENV182569018
OJEY01000028
[OJEY] seawater metagenome; Sea water
3018
2934
-
Leu
GAG
[ENA]
¡û
>WENV182570130
OJFB01017427
[OJFB] seawater metagenome; Sea water
226
310
+
Leu
GAG
[ENA]
¡û
>WENV182571283
OJFG01006462
[OJFG] seawater metagenome; Sea water
945
1029
+
Leu
GAG
[ENA]
¡û
>WENV182574584
OJFS01000057
[OJFS] seawater metagenome; Sea water
5384
5300
-
Leu
GAG
[ENA]
¡û
>WENV182577967
OJGM01000128
[OJGM] seawater metagenome; Sea water
10152
10236
+
Leu
GAG
[ENA]
¡û
>WENV182580878
OJGW01022756
[OJGW] seawater metagenome; Sea water
1027
943
-
Leu
GAG
[ENA]
¡û
>WENV182582147
OJHA01000366
[OJHA] seawater metagenome; Sea water
3458
3542
+
Leu
GAG
[ENA]
¡û
>WENV182582375
OJHB01000005
[OJHB] seawater metagenome; Sea water
56979
57063
+
Leu
GAG
[ENA]
¡û
>WENV182583116
OJHD01000268
[OJHD] seawater metagenome; Sea water
4853
4937
+
Leu
GAG
[ENA]
¡û
>WENV182586823
OJHK01006314
[OJHK] seawater metagenome; Sea water
404
320
-
Leu
GAG
[ENA]
¡û
>WENV182587586
OJHN01000175
[OJHN] seawater metagenome; Sea water
7215
7299
+
Leu
GAG
[ENA]
¡û
>WENV182592400
OJIR01000293
[OJIR] seawater metagenome; Sea water
16804
16888
+
Leu
GAG
[ENA]
¡û
>WENV183054513
OLGU01000012
[OLGU] seawater metagenome; Sea water
1699
1615
-
Leu
GAG
[ENA]
¡û
>WENV183059059
OLHS01002344
[OLHS] seawater metagenome; Sea water
1160
1076
-
Leu
GAG
[ENA]
¡û
>WENV183059322
OLHU01000663
[OLHU] seawater metagenome; Sea water
1766
1682
-
Leu
GAG
[ENA]
¡û
>WENV183060176
OLHX01000010
[OLHX] seawater metagenome; Sea water
1752
1668
-
Leu
GAG
[ENA]
¡û
>WENV170571422
FLOH01000159
[FLOH] marine metagenome; water
95180
95266
+
Leu
GAG
[ENA]
¡û
>WENV170620144
FUWD013026475
[FUWD] metagenome; unknown
6139
6223
+
Leu
GAG
[ENA]
¡û
>WENV170624235
FUWD013178218
[FUWD] metagenome; unknown
316
232
-
Leu
GAG
[ENA]
¡û
>WENV170624721
FUWD013185616
[FUWD] metagenome; unknown
1910
1824
-
Leu
GAG
[ENA]
¡û
>WENV170627445
FUWD013232812
[FUWD] metagenome; unknown
14309
14393
+
Leu
GAG
[ENA]
¡û
>WENV170628282
FUWD013244317
[FUWD] metagenome; unknown
5170
5086
-
Leu
GAG
[ENA]
¡û
>WENV170632517
FUWD013383799
[FUWD] metagenome; unknown
316
232
-
Leu
GAG
[ENA]
¡û
>WENV170953138
MEHZ011630823
[MEHZ] marine metagenome; marine surface water
38763
38849
+
Leu
GAG
[ENA]
¡û
>C181143926
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1440217
1440301
+
Leu
GAG
-
¡û
>C191101009
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
3027165
3027081
-
Leu
GAG
-
¡û
>C191182567
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
4198891
4198807
-
Leu
GAG
-
¡û
>W1910784622
MPZN01000033
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
23142
23058
-
Leu
GAG
[ENA]
¡û
>W1910784623
MPZN01000033
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
22153
22069
-
Leu
GAG
[ENA]
¡û
>W1911671553
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
181779
181863
+
Leu
GAG
[ENA]
¡û
>W1810569019
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
129685
129769
+
Leu
GAG
[ENA]
¡û
>W2010310079
CABWLU010000009
Actinomycetota
Plantibacter sp. T3 [CABWLU]
1386535
1386451
-
Leu
GAG
[ENA]
¡û
>SRA1035256
SRR035089.268624
454 Sequencing (SRP001810)
279
195
-
Leu
GAG
[SRA]
>W2010893211
MPZN01000033
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
23142
23058
-
Leu
GAG
[ENA]
¡û
>W2010893212
MPZN01000033
Actinomycetota
Leifsonia pindariensis PON 10 [MPZN]
22153
22069
-
Leu
GAG
[ENA]
¡û
>W2011249943
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
181779
181863
+
Leu
GAG
[ENA]
¡û
>W2011354947
RAQA01000003
Actinomycetota
Microterricola sp. OV434 [RAQA]
583756
583840
+
Leu
GAG
[ENA]
¡û
>W2011354948
RAQA01000003
Actinomycetota
Microterricola sp. OV434 [RAQA]
584035
584119
+
Leu
GAG
[ENA]
¡û
>W2011373238
RBIC01000008
Actinomycetota
Plantibacter sp. YR521 [RBIC]
189303
189387
+
Leu
GAG
[ENA]
¡û
>W2011403422
RCUV01000005
Actinomycetota
Mycetocola manganoxydans CCTCC AB209002 [RCUV]
153673
153757
+
Leu
GAG
[ENA]
¡û
>W2011404191
RCWJ01000001
Actinomycetota
Mycetocola zhadangensis ZD1-4 [RCWJ]
1094545
1094461
-
Leu
GAG
[ENA]
¡û
>SRA1044826
SRR035092.353139
454 Sequencing (SRP001813)
7
91
+
Leu
GAG
[SRA]
>W2011447542
RKHL01000001
Actinomycetota
Plantibacter flavus DSM 14012 [RKHL]
2096752
2096668
-
Leu
GAG
[ENA]
¡û
>SRA1045601
SRR035093.132384
454 Sequencing (SRP001814)
308
392
+
Leu
GAG
[SRA]
>SRA1046116
SRR035093.239356
454 Sequencing (SRP001814)
167
83
-
Leu
GAG
[SRA]
>SRA1046219
SRR035093.255698
454 Sequencing (SRP001814)
154
70
-
Leu
GAG
[SRA]
>W2011580505
SHLC01000001
Actinomycetota
Microterricola gilva DSM 18319 [SHLC]
1620833
1620749
-
Leu
GAG
[ENA]
¡û
>W2011580506
SHLC01000001
Actinomycetota
Microterricola gilva DSM 18319 [SHLC]
1620553
1620469
-
Leu
GAG
[ENA]
¡û
>W2011600596
SISG01000001
Actinomycetota
Glaciihabitans sp. RP-3-7 [SISG]
843381
843465
+
Leu
GAG
[ENA]
¡û
>SRA1051985
SRR035098.119089
454 Sequencing (SRP001819)
408
324
-
Leu
GAG
[SRA]
>SRA1052066
SRR035098.133158
454 Sequencing (SRP001819)
170
86
-
Leu
GAG
[SRA]
>SRA1052220
SRR035098.162192
454 Sequencing (SRP001819)
361
277
-
Leu
GAG
[SRA]
>SRA1052334
SRR035098.183585
454 Sequencing (SRP001819)
285
369
+
Leu
GAG
[SRA]
>SRA1052868
SRR035098.288368
454 Sequencing (SRP001819)
163
247
+
Leu
GAG
[SRA]
>SRA1053508
SRR035098.422909
454 Sequencing (SRP001819)
143
227
+
Leu
GAG
[SRA]
>W2110021317
BMEK01000001
Actinomycetota
Mycetocola zhadangensis CGMCC 1.12042 [BMEK]
1093083
1092999
-
Leu
GAG
[ENA]
¡û
>W2110047691
BMXM01000001
Actinomycetota
Mycetocola manganoxydans KCTC 19753 [BMXM]
448475
448391
-
Leu
GAG
[ENA]
¡û
>W2110288791
JACYNV010000001
Actinomycetota
Plantibacter sp. CFBP 8775 CFBP8775 [JACYNV]
2489603
2489519
-
Leu
GAG
[ENA]
¡û
>W2110289968
JACYTS010000002
Actinomycetota
Plantibacter sp. CFBP 8798 CFBP8798 [JACYTS]
181461
181545
+
Leu
GAG
[ENA]
¡û
>W2110290050
JACYTU010000001
Actinomycetota
Plantibacter sp. CFBP 8804 CFBP8804 [JACYTU]
157438
157522
+
Leu
GAG
[ENA]
¡û
>W2110290158
JACYTW010000009
Actinomycetota
Plantibacter sp. CFBP 13570 CFBP13570 [JACYTW]
73368
73284
-
Leu
GAG
[ENA]
¡û
>W2110329756
JADKSI010000002
Actinomycetota
Plantibacter sp. VKM Ac-2876 [JADKSI]
187194
187278
+
Leu
GAG
[ENA]
¡û
>W2110329820
JADKSJ010000001
Actinomycetota
Plantibacter sp. VKM Ac-2880 [JADKSJ]
2357524
2357440
-
Leu
GAG
[ENA]
¡û
>W2110329868
JADKSK010000001
Actinomycetota
Plantibacter sp. VKM Ac-2885 [JADKSK]
2430605
2430521
-
Leu
GAG
[ENA]
¡û
>W2110458244
JAFBBW010000001
Actinomycetota
Agromyces aurantiacus DSM 14598 [JAFBBW]
2371012
2371096
+
Leu
GAG
[ENA]
¡û
>W1511432342
JUGL01000011
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
457434
457518
+
Leu
GAG
[ENA]
¡û
>W1511432343
JUGL01000011
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
459651
459735
+
Leu
GAG
[ENA]
¡û
>WENV046498
AACY022603084
Marine microbial communities from Global Ocean Sampling (GOS)
900
814
-
Leu
GAG
[ENA]
>C161067259
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
1330499
1330415
-
Leu
GAG
[Ensembl]
¡û
>C161067260
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
1330209
1330125
-
Leu
GAG
[Ensembl]
¡û
>W1610723672
LMDN01000003
Actinomycetota
Leifsonia sp. Root4 [LMDN]
596458
596542
+
Leu
GAG
[ENA]
¡û
>W1610732012
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
182530
182614
+
Leu
GAG
[ENA]
¡û
>W1610737344
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
182736
182820
+
Leu
GAG
[ENA]
¡û
>W1610738528
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
182550
182634
+
Leu
GAG
[ENA]
¡û
>W1610981928
LWCT01000050
Actinomycetota
Plantibacter sp. H53 [LWCT]
65969
65885
-
Leu
GAG
[ENA]
¡û
>W1710570918
FOVM01000003
Actinomycetota
Mycetocola miduiensis [FOVM]
14891
14807
-
Leu
GAG
[ENA]
¡û
>W1710603963
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
2462984
2462900
-
Leu
GAG
[ENA]
¡û
>W1710608071
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
1232458
1232374
-
Leu
GAG
[ENA]
¡û
>W1710609328
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
108391
108475
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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