This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81198 (21 seq.)
>W1711506991
MKXD01000002
Gammaproteobacteria
Enterobacter kobei [MKXD]
2688047
2687962
-
Leu
TAA
[ENA]
¡û
>W1711751043
MUNJ01000002
Gammaproteobacteria
Plesiomonas shigelloides [MUNJ]
236689
236604
-
Leu
TAA
[ENA]
¡û
>C171108490
CP020466
Gammaproteobacteria
Edwardsiella ictaluri RUSVM-1 [CP020466]
787877
787792
-
Leu
TAA
-
¡û
>W131157077
AQQO01000021
Gammaproteobacteria
Plesiomonas shigelloides 302-73 [AQQO]
124007
123922
-
Leu
TAA
[ENA]
¡û
>WENV183065359
OLIJ01000022
[OLIJ] metagenome; faeces
66845
66930
+
Leu
TAA
[ENA]
¢þ
>WENV183780881
PPYF01188092
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7858
7943
+
Leu
TAA
[ENA]
¢þ
>C181083605
CP023525
Gammaproteobacteria
Cedecea neteri FDAARGOS_392 [CP023525]
1799968
1800053
+
Leu
TAA
-
¡û
>C181160605
CP027852
Gammaproteobacteria
Plesiomonas shigelloides MS-17-188 [CP027852]
1025755
1025670
-
Leu
TAA
-
¡û
>C191177424
CP040428
Gammaproteobacteria
Jejubacter calystegiae KSNA2 [CP040428]
4471955
4471870
-
Leu
TAA
-
¡û
>W1910502220
FYBC01000001
Gammaproteobacteria
Enterobacter kobei [FYBC]
531114
531029
-
Leu
TAA
[ENA]
¡û
>W1911021878
NLPI01000004
Gammaproteobacteria
Escherichia coli MOD1-EC5445 [NLPI]
259059
258974
-
Leu
TAA
[ENA]
¡û
>W1911021907
NLPJ01000010
Gammaproteobacteria
Escherichia coli MOD1-EC5443 [NLPJ]
102374
102459
+
Leu
TAA
[ENA]
¡û
>W1810423062
PYSI01000001
Gammaproteobacteria
Plesiomonas shigelloides FM82 [PYSI]
409421
409506
+
Leu
TAA
[ENA]
¡û
>C151009218
CP006568
Gammaproteobacteria
Candidatus Sodalis pierantonius str. SOPE [CP006568]
1902659
1902574
-
Leu
TAA
[Ensembl]
¡û
>C151051440
CP009451
Gammaproteobacteria
Cedecea neteri SSMD04 [CP009451]
4517105
4517190
+
Leu
TAA
[Ensembl]
¡û
>C151051728
CP009458
Gammaproteobacteria
Cedecea neteri M006 [CP009458]
4143635
4143550
-
Leu
TAA
[Ensembl]
¡û
>C151076348
CP011077
Gammaproteobacteria
Klebsiella michiganensis RC10 [CP011077]
2924648
2924563
-
Leu
TAA
[Ensembl]
¡û
>W1511347955
JRKB01000024
Gammaproteobacteria
Plesiomonas sp. ZOR0011 [JRKB]
215
300
+
Leu
TAA
[ENA]
¡û
>W1511478904
JWHQ01000026
Gammaproteobacteria
Plesiomonas shigelloides GN7 [JWHQ]
238140
238225
+
Leu
TAA
[ENA]
¡û
>C161109339
LT575468
Gammaproteobacteria
Plesiomonas shigelloides NCTC10360 [LT575468]
1346162
1346247
+
Leu
TAA
[Ensembl]
¡û
>W1710608256
FXAS01000027
Gammaproteobacteria
Cedecea sp. NFIX57 [FXAS]
54382
54297
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK