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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81586 (49 seq.)
>W131027657
AJAM01000023
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
37840
37754
-
Leu
GAG
[ENA]
¡û
>W131201127
ASVX01000002
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
127662
127748
+
Leu
GAG
[ENA]
¡û
>W131208707
ATIC01000046
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
90095
90009
-
Leu
GAG
[ENA]
¡û
>W131208750
ATID01000053
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
126612
126526
-
Leu
GAG
[ENA]
¡û
>W131209116
ATIM01000114
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
14251
14337
+
Leu
GAG
[ENA]
¡û
>W1711460411
MJEF01000011
Bacillota
Enterococcus casseliflavus [MJEF]
49331
49245
-
Leu
GAG
[ENA]
¡û
>W1711460478
MJEG01000009
Bacillota
Enterococcus casseliflavus [MJEG]
127229
127143
-
Leu
GAG
[ENA]
¡û
>W1711738473
MUBE01000017
Bacillota
Enterococcus casseliflavus [MUBE]
98903
98987
+
Leu
GAG
[ENA]
¡û
>W1712067639
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
1169775
1169689
-
Leu
GAG
[ENA]
¡û
>W1712067770
NGLF01000001
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
2516198
2516112
-
Leu
GAG
[ENA]
¡û
>W1712067883
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
2071028
2071114
+
Leu
GAG
[ENA]
¡û
>W1712068033
NGLJ01000002
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
811410
811492
+
Leu
GAG
[ENA]
¡û
>W1712068067
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
3363226
3363140
-
Leu
GAG
[ENA]
¡û
>W1712068127
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
2020385
2020471
+
Leu
GAG
[ENA]
¡û
>W1712068226
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
2961973
2961887
-
Leu
GAG
[ENA]
¡û
>W1712069340
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
755508
755422
-
Leu
GAG
[ENA]
¡û
>W1712097012
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
2433222
2433308
+
Leu
GAG
[ENA]
¡û
>W1712097149
NIBP01000001
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
860564
860650
+
Leu
GAG
[ENA]
¡û
>WENV180135307
OATK01018719
[OATK] human gut metagenome; faeces
266
180
-
Pro
GGG
[ENA]
¢þ
>WENV180152986
OAUR01000100
[OAUR] human gut metagenome; faeces
27606
27520
-
Leu
GAG
[ENA]
¢þ
>WENV180168017
OAVP01002895
[OAVP] human gut metagenome; faeces
177
91
-
Leu
GAG
[ENA]
¢þ
>WENV180415130
OBVD01023134
[OBVD] human gut metagenome; faeces
107
193
+
Leu
GAG
[ENA]
¢þ
>WENV180448570
OBXF01000096
[OBXF] human gut metagenome; faeces
67688
67774
+
Leu
GAG
[ENA]
¢þ
>WENV180457637
OBXV01000004
[OBXV] human gut metagenome; faeces
360887
360802
-
Leu
GAG
[ENA]
¢þ
>WENV180503665
OCAN01000003
[OCAN] human gut metagenome; faeces
175214
175300
+
Leu
GAG
[ENA]
¢þ
>WENV182539229
OIXV01002334
[OIXV] human gut metagenome; faeces
246
160
-
Leu
GAG
[ENA]
¢þ
>WENV182601800
OJJJ01000608
[OJJJ] metagenome; faeces
13032
13118
+
Leu
GAG
[ENA]
¢þ
>WENV182613818
OJKA01017255
[OJKA] metagenome; faeces
739
825
+
Leu
GAG
[ENA]
¢þ
>WENV182949776
OKVQ01000145
[OKVQ] human gut metagenome; human gut
287
201
-
Leu
GAG
[ENA]
¢þ
>C181083354
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
2823686
2823600
-
Leu
GAG
-
¡û
>C181114811
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
1518752
1518666
-
Leu
GAG
-
¡û
>C191094178
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
2212779
2212693
-
Leu
GAG
-
¡û
>W09115342
ACAH01000052
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
37777
37691
-
Leu
GAG
[ENA]
¡û
>W09115530
ACAL01000037
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
37775
37689
-
Leu
GAG
[ENA]
¡û
>W09115654
ACAO01000040
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
19699
19613
-
Leu
GAG
[ENA]
¡û
>W1910181704
BJMG01000010
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
46394
46308
-
Leu
GAG
[ENA]
¡û
>W1810793553
QRJU01000006
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
109977
110063
+
Leu
GAG
[ENA]
¡û
>W1810798119
QRMZ01000001
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
213852
213766
-
Leu
GAG
[ENA]
¡û
>C151006821
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
2040820
2040906
+
Leu
GAG
[Ensembl]
¡û
>W1510079550
CDRE01001693
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
1730
1644
-
Leu
GAG
[ENA]
¡û
>W11151171
AEWT01000026
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
136585
136671
+
Leu
GAG
[ENA]
¡û
>C161066333
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
2529172
2529086
-
Leu
GAG
[Ensembl]
¡û
>W121077260
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
1060730
1060816
+
Leu
GAG
[ENA]
¡û
>W121086955
AKKS01000013
Bacillota
Enterococcus sp. C1 [AKKS]
130384
130470
+
Leu
GAG
[ENA]
¡û
>W1610066456
BCPT01000007
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
46403
46317
-
Leu
GAG
[ENA]
¡û
>W1710063794
BCPT01000007
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
46403
46317
-
Leu
GAG
[ENA]
¡û
>W1710520598
FNFS01000002
Bacillota
Enterococcus casseliflavus [FNFS]
226644
226558
-
Leu
GAG
[ENA]
¡û
>W1710559382
FOMP01000002
Bacillota
Enterococcus casseliflavus [FOMP]
133140
133226
+
Leu
GAG
[ENA]
¡û
>W1710659242
JXKK01000006
Bacillota
Enterococcus casseliflavus [JXKK]
74086
74000
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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