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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81622 (58 seq.)
>W1710853387
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159680
159595
-
Tyr
GTA
[ENA]
¡û
>C171057631
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3186873
3186958
+
Tyr
GTA
-
¡û
>C171057634
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
3285242
3285327
+
Tyr
GTA
-
¡û
>W131145919
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1856250
1856335
+
Tyr
GTA
[ENA]
¡û
>w027800
ABCM01000011
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
195990
195908
-
Tyr
GTA
[ENA]
¡û
>w027797
ABCM01000010
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
175083
174996
-
Tyr
GTA
[ENA]
¡û
>WENV180356518
OBNK01042545
[OBNK] sediment metagenome; sediment
337
254
-
Tyr
GTA
[ENA]
¢þ
>W141142877
AWRU01000032
Bacteroidota
Pedobacter sp. V48 [AWRU]
34928
34843
-
Tyr
GTA
[ENA]
¡û
>WENV183741158
PJUF01048528
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
408
325
-
Tyr
GTA
[ENA]
¢þ
>WENV183741847
PJUG01027386
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
112
197
+
Tyr
GTA
[ENA]
¢þ
>WENV183742675
PJUI01000057
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
56573
56658
+
Tyr
GTA
[ENA]
¢þ
>WENV183743473
PJUJ01001844
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
703
620
-
Tyr
GTA
[ENA]
¢þ
>WENV183745285
PJUL01015668
[PJUL] feces metagenome; Chicken feces enriched on filter paper
551
468
-
Tyr
GTA
[ENA]
¢þ
>WENV170011323
APMI01055975
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2278
2363
+
Tyr
GTA
[ENA]
¢þ
>W09109591
ABUJ01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
178625
178710
+
Tyr
GTA
[ENA]
¡û
>C181094357
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
5219888
5219971
+
Tyr
GTA
-
¡û
>C191226453
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
6189565
6189482
-
Tyr
GTA
-
¡û
>C191226471
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
2345397
2345314
-
Tyr
GTA
-
¡û
>W141727611
JNFF01000002
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
44995
45078
+
Tyr
GTA
[ENA]
¡û
>W141727647
JNFF01000112
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
2084
2167
+
Tyr
GTA
[ENA]
¡û
>C09108539
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
993041
993126
+
Tyr
GTA
[Ensembl]
¡û
>W1911496557
OCMT01000002
Bacteroidota
Pedobacter xixiisoli CGMCC 1.12803 [OCMT]
1102260
1102175
-
Tyr
GTA
[ENA]
¡û
>W1810405029
PYLS01000006
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
367343
367258
-
Tyr
GTA
[ENA]
¡û
>W1810474638
QAIL01000169
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
285
368
+
Tyr
GTA
[ENA]
¡û
>W1810474659
QAIL01000374
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
36703
36786
+
Tyr
GTA
[ENA]
¡û
>W1810503888
QBKM01000001
Bacteroidota
Pedobacter sp. YR016 [QBKM]
23115
23198
+
Tyr
GTA
[ENA]
¡û
>W1810503922
QBKM01000006
Bacteroidota
Pedobacter sp. YR016 [QBKM]
113541
113624
+
Tyr
GTA
[ENA]
¡û
>W1810676155
QKLU01000006
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
172102
172185
+
Tyr
GTA
[ENA]
¡û
>W1810693883
QLLR01000007
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
105877
105792
-
Tyr
GTA
[ENA]
¡û
>W1810693895
QLLR01000017
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
52746
52829
+
Tyr
GTA
[ENA]
¡û
>W1810704221
QMHN01000002
Bacteroidota
Pedobacter chitinilyticus CM134L-2 [QMHN]
473127
473042
-
Tyr
GTA
[ENA]
¡û
>W1810704260
QMHO01000003
Bacteroidota
Pedobacter nanyangensis Q-4 [QMHO]
63146
63061
-
Tyr
GTA
[ENA]
¡û
>W1810704318
QMHP01000008
Bacteroidota
Nubsella zeaxanthinifaciens TDMA-5 [QMHP]
181817
181902
+
Tyr
GTA
[ENA]
¡û
>W1511509403
JXRA01000012
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
4949
4866
-
Tyr
GTA
[ENA]
¡û
>W1511509409
JXRA01000019
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
61864
61947
+
Tyr
GTA
[ENA]
¡û
>C161049156
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
5432070
5431985
-
Tyr
GTA
[Ensembl]
¡û
>C161049184
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
949938
949855
-
Tyr
GTA
[Ensembl]
¡û
>C161049185
CP012996
Bacteroidota
Pedobacter sp. PACM 27299 PAMC 27299 [CP012996]
948852
948769
-
Tyr
GTA
[Ensembl]
¡û
>C161073030
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5738193
5738110
-
Tyr
GTA
[Ensembl]
¡û
>C161073031
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5720707
5720622
-
Tyr
GTA
[Ensembl]
¡û
>C161073038
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4084433
4084350
-
Tyr
GTA
[Ensembl]
¡û
>W1610612127
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
3823
3908
+
Tyr
GTA
[ENA]
¡û
>W1610716511
LLWP01000005
Bacteroidota
Pedobacter sp. Hv1 [LLWP]
159680
159595
-
Tyr
GTA
[ENA]
¡û
>W1710519688
FNEX01000016
Bacteroidota
Pedobacter sp. ok626 [FNEX]
160403
160488
+
Tyr
GTA
[ENA]
¡û
>W1710519700
FNEX01000026
Bacteroidota
Pedobacter sp. ok626 [FNEX]
68965
68882
-
Tyr
GTA
[ENA]
¡û
>W1710522104
FNGY01000013
Bacteroidota
Pedobacter steynii [FNGY]
9496
9581
+
Tyr
GTA
[ENA]
¡û
>W1710522121
FNGY01000022
Bacteroidota
Pedobacter steynii [FNGY]
3279
3194
-
Tyr
GTA
[ENA]
¡û
>W1710522137
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
500915
500998
+
Tyr
GTA
[ENA]
¡û
>W1710522170
FNGZ01000010
Bacteroidota
Pedobacter antarcticus [FNGZ]
106037
106120
+
Tyr
GTA
[ENA]
¡û
>W1710533315
FNRA01000011
Bacteroidota
Pedobacter hartonius [FNRA]
115521
115604
+
Tyr
GTA
[ENA]
¡û
>W1710560884
FONS01000010
Bacteroidota
Pedobacter antarcticus [FONS]
15247
15164
-
Tyr
GTA
[ENA]
¡û
>W1710560888
FONS01000013
Bacteroidota
Pedobacter antarcticus [FONS]
102955
102872
-
Tyr
GTA
[ENA]
¡û
>W1710583247
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
723462
723547
+
Tyr
GTA
[ENA]
¡û
>W1710583250
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
889807
889892
+
Tyr
GTA
[ENA]
¡û
>W1710606380
FWXT01000005
Bacteroidota
Pedobacter africanus [FWXT]
127401
127316
-
Tyr
GTA
[ENA]
¡û
>W1710606786
FWYB01000005
Bacteroidota
Pedobacter nyackensis [FWYB]
130729
130644
-
Tyr
GTA
[ENA]
¡û
>W1710606798
FWYB01000011
Bacteroidota
Pedobacter nyackensis [FWYB]
30784
30869
+
Tyr
GTA
[ENA]
¡û
>W1710733633
LGEL01000049
Bacteroidota
Pedobacter panaciterrae [LGEL]
3823
3908
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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