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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81636 (10 seq.)
>WENV180274879
OBHO01000854
[OBHO] metagenome; water
123
37
-
Leu
CAG
[ENA]
¡û
>WENV180317065
OBKJ01015189
[OBKJ] metagenome; hydrothermal vent
4
90
+
Leu
CAG
[ENA]
¡û
>WENV180332357
OBLD01000659
[OBLD] metagenome; water
2216
2130
-
Leu
CAG
[ENA]
¡û
>WENV180332792
OBLD01142297
[OBLD] metagenome; water
8
94
+
Leu
CAG
[ENA]
¡û
>WENV181206206
OFAT01000335
[OFAT] metagenome; hydrothermal vent
1333
1247
-
Leu
CAG
[ENA]
¡û
>WENV181206654
OFAW01001034
[OFAW] metagenome; hydrothermal vent
3139
3225
+
Leu
CAG
[ENA]
¡û
>WENV181207117
OFAY01000780
[OFAY] metagenome; hydrothermal vent
3139
3225
+
Leu
CAG
[ENA]
¡û
>WENV181207493
OFAZ01001064
[OFAZ] metagenome; hydrothermal vent
239
153
-
Leu
CAG
[ENA]
¡û
>WENV181207843
OFBA01000848
[OFBA] metagenome; hydrothermal vent
238
152
-
Leu
CAG
[ENA]
¡û
>W1511534113
JYNP01000040
Thermodesulfobacteriota
Desulfonatronovibrio magnus AHT22 [JYNP]
18840
18926
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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