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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81707 (15 seq.)
>W1711091948
LTDO01000003
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
395617
395532
-
Leu
GAG
[ENA]
¡û
>C171071974
CP018051
Gammaproteobacteria
Francisella orientalis F1 [CP018051]
1689174
1689089
-
Leu
GAG
-
¡û
>C08005019
CP000937
Gammaproteobacteria
Francisella philomiragia [CP000937]
1056638
1056723
+
Leu
GAG
[Ensembl]
¡û
>WENV183707770
PDWI01010533
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
658
573
-
Leu
GAG
[ENA]
¢þ
>W09113768
ABYY01000008
Gammaproteobacteria
Francisella philomiragia subsp. philomiragia ATCC 25015 [ABYY]
112550
112635
+
Leu
GAG
[ENA]
¡û
>W141789945
JOUE01000006
Gammaproteobacteria
Francisella philomiragia [JOUE]
722600
722515
-
Leu
GAG
[ENA]
¡û
>C141010048
CP006875
Gammaproteobacteria
Francisella orientalis LADL 07-285A LADL--07-285A [CP006875]
1748951
1748866
-
Leu
GAG
[Ensembl]
¡û
>C151049515
CP009343
Gammaproteobacteria
Francisella philomiragia O#319-029 [CP009343]
1220852
1220937
+
Leu
GAG
[Ensembl]
¡û
>C151051174
CP009444
Gammaproteobacteria
Francisella philomiragia GA01-2801 [CP009444]
233212
233127
-
Leu
GAG
[Ensembl]
¡û
>C151087381
CP011921
Gammaproteobacteria
Francisella orientalis FNO12 [CP011921]
1689244
1689159
-
Leu
GAG
[Ensembl]
¡û
>C151087418
CP011922
Gammaproteobacteria
Francisella orientalis FNO24 [CP011922]
1691822
1691737
-
Leu
GAG
[Ensembl]
¡û
>C151087454
CP011923
Gammaproteobacteria
Francisella orientalis FNO190 [CP011923]
1689137
1689052
-
Leu
GAG
[Ensembl]
¡û
>C151091890
CP012153
Gammaproteobacteria
Francisella orientalis FNO01 [CP012153]
1689346
1689261
-
Leu
GAG
-
¡û
>C121012420
CP003402
Gammaproteobacteria
Francisella orientalis str. Toba 04 [CP003402]
554538
554623
+
Leu
GAG
[Ensembl]
¡û
>W1610926044
LTDO01000003
Gammaproteobacteria
Francisella orientalis subsp. orientalis [LTDO]
395617
395532
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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