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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.81773 (6 seq.)
>WENV181409860
OGCI01000766
[OGCI] hot springs metagenome; Hot spring water
12085
12171
+
Leu
CAG
[ENA]
¡û
>WENV181414441
OGCL01000389
[OGCL] hot springs metagenome; Hot spring water
42454
42540
+
Leu
CAG
[ENA]
¡û
>W1910654054
LYXE01000030
Chloroflexota
Candidatus Chloroploca asiatica B7-9 [LYXE]
11273
11187
-
Leu
CAG
[ENA]
¡û
>W1911189753
NQWI01000027
Chloroflexota
Candidatus Viridilinea mediisalina Kir15-3F [NQWI]
4747
4661
-
Leu
CAG
[ENA]
¡û
>W2010799602
LYXE01000030
Chloroflexota
Candidatus Chloroploca asiatica B7-9 [LYXE]
11273
11187
-
Leu
CAG
[ENA]
¡û
>W2011045038
NQWI01000027
Chloroflexota
Candidatus Viridilinea mediisalina Kir15-3F [NQWI]
4747
4661
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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