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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82146 (17 seq.)
>W1711502390
MKSQ01000017
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
46284
46369
+
Leu
TAA
[ENA]
¡û
>C171050044
CP016499
Alphaproteobacteria
Agrobacterium sp. RAC06 [CP016499]
957855
957770
-
Leu
TAA
-
¡û
>WENV181168246
OEIU01223826
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
45
130
+
Leu
TAA
[ENA]
¢þ
>WENV170680951
LFEF01037958
[LFEF] freshwater metagenome; waterbloom
44454
44369
-
Leu
TAA
[ENA]
¢þ
>C181051596
CP021371
Alphaproteobacteria
Rhizobium sp. ACO-34A [CP021371]
2043420
2043337
-
Leu
TAA
-
¡û
>C181063220
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
2193143
2193058
-
Leu
TAA
-
¡û
>W141739456
JNNU01000012
Alphaproteobacteria
Neorhizobium vignae [JNNU]
143689
143604
-
Leu
TAA
[ENA]
¡û
>W141815788
JQJJ01000008
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
139452
139537
+
Leu
TAA
[ENA]
¡û
>W1810346025
PVBG01000003
Alphaproteobacteria
Neorhizobium tomejilense T17_20 [PVBG]
165524
165609
+
Leu
TAA
[ENA]
¡û
>W1810346078
PVBH01000002
Alphaproteobacteria
Neorhizobium tomejilense T11_12 [PVBH]
206795
206710
-
Leu
TAA
[ENA]
¡û
>W1810346215
PVBK01000002
Alphaproteobacteria
Neorhizobium sp. T7_12 [PVBK]
204995
205080
+
Leu
TAA
[ENA]
¡û
>C151101689
HG938355
Alphaproteobacteria
Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI HAMBI 1141 [HG938355]
1273366
1273451
+
Leu
TAA
[Ensembl]
¡û
>W1510053020
CCRJ01000014
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRJ]
142229
142144
-
Leu
TAA
[ENA]
¡û
>W1510053060
CCRK01000010
Alphaproteobacteria
Neorhizobium galegae bv. officinalis [CCRK]
148954
148869
-
Leu
TAA
[ENA]
¡û
>W1510053087
CCRL01000001
Alphaproteobacteria
Neorhizobium galegae bv. orientalis [CCRL]
299628
299543
-
Leu
TAA
[ENA]
¡û
>C161070700
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1944794
1944709
-
Leu
TAA
[Ensembl]
¡û
>W1710596545
FTMQ01000003
Alphaproteobacteria
Rhizobium sp. RU33A [FTMQ]
615569
615654
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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