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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.82976 (75 seq.)
>W1710905388
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45661
45744
+
Leu
GAG
[ENA]
¡û
>W1710914544
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
47184
47267
+
Leu
GAG
[ENA]
¡û
>W1710914589
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5510
5427
-
Leu
GAG
[ENA]
¡û
>W1711053995
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
72413
72330
-
Leu
GAG
[ENA]
¡û
>W1711431496
MIJV01000009
Bacteroidota
Flavobacterium psychrophilum [MIJV]
48068
48151
+
Leu
GAG
[ENA]
¡û
>W1711431533
MIJW01000009
Bacteroidota
Flavobacterium psychrophilum [MIJW]
26569
26652
+
Leu
GAG
[ENA]
¡û
>W1711712454
MTBY01000014
Bacteroidota
Flavobacterium psychrophilum [MTBY]
61380
61297
-
Leu
GAG
[ENA]
¡û
>W1711712489
MTBZ01000010
Bacteroidota
Flavobacterium psychrophilum [MTBZ]
83270
83187
-
Leu
GAG
[ENA]
¡û
>W1711712566
MTCB01000003
Bacteroidota
Flavobacterium psychrophilum [MTCB]
157701
157618
-
Leu
GAG
[ENA]
¡û
>W1711712618
MTCC01000017
Bacteroidota
Flavobacterium psychrophilum [MTCC]
47167
47250
+
Leu
GAG
[ENA]
¡û
>W1711712656
MTCD01000267
Bacteroidota
Flavobacterium psychrophilum [MTCD]
568
485
-
Leu
GAG
[ENA]
¡û
>C009506
AM398681
Bacteroidota
Flavobacterium psychrophilum JIP02/86 [AM398681]
1637282
1637364
+
Leu
GAG
[Ensembl]
¡û
>WENV183618086
OOFL01019473
[OOFL] marine metagenome; seawater
146
229
+
Leu
GAG
[ENA]
¢þ
>WENV183621020
OOFT01002457
[OOFT] marine metagenome; sea ice
1655
1572
-
Leu
GAG
[ENA]
¢þ
>C181220267
LT670843
Bacteroidota
Flavobacterium psychrophilum OSU THCO2-90 [LT670843]
2049271
2049354
+
Leu
GAG
-
¡û
>W1910184596
BJSV01000055
Bacteroidota
Flavobacterium psychrophilum NNS1-1804 [BJSV]
42108
42191
+
Leu
GAG
[ENA]
¡û
>W1910184627
BJSW01000034
Bacteroidota
Flavobacterium psychrophilum NNS2-1804 [BJSW]
42108
42191
+
Leu
GAG
[ENA]
¡û
>W1910184677
BJSX01000090
Bacteroidota
Flavobacterium psychrophilum NNS4-1804 [BJSX]
39647
39730
+
Leu
GAG
[ENA]
¡û
>W1910184715
BJSY01000063
Bacteroidota
Flavobacterium psychrophilum NNS5-1804 [BJSY]
5358
5275
-
Leu
GAG
[ENA]
¡û
>W1910184737
BJSZ01000036
Bacteroidota
Flavobacterium psychrophilum NNS6-1804 [BJSZ]
42108
42191
+
Leu
GAG
[ENA]
¡û
>W1910184766
BJTA01000012
Bacteroidota
Flavobacterium psychrophilum NNS7-1804 [BJTA]
42108
42191
+
Leu
GAG
[ENA]
¡û
>W1910184876
BJTD01000017
Bacteroidota
Flavobacterium psychrophilum KKAC-1706 [BJTD]
5351
5268
-
Leu
GAG
[ENA]
¡û
>W1910184930
BJTE01000046
Bacteroidota
Flavobacterium psychrophilum KKOK-1706 [BJTE]
5357
5274
-
Leu
GAG
[ENA]
¡û
>W1910184968
BJTF01000057
Bacteroidota
Flavobacterium psychrophilum KHIR-1705 [BJTF]
42108
42191
+
Leu
GAG
[ENA]
¡û
>W1910502970
FYBY01000004
Bacteroidota
Flavobacterium psychrophilum CH8 [FYBY]
37738
37821
+
Leu
GAG
[ENA]
¡û
>W1910503002
FYBZ01000001
Bacteroidota
Flavobacterium psychrophilum FRGDSA 1882/11 [FYBZ]
84043
83960
-
Leu
GAG
[ENA]
¡û
>W1910503067
FYCB01000006
Bacteroidota
Flavobacterium psychrophilum DK150 [FYCB]
33975
33892
-
Leu
GAG
[ENA]
¡û
>W1910503108
FYCC01000020
Bacteroidota
Flavobacterium psychrophilum FI056 [FYCC]
45241
45324
+
Leu
GAG
[ENA]
¡û
>W1910503137
FYCD01000010
Bacteroidota
Flavobacterium psychrophilum DK001 [FYCD]
45116
45199
+
Leu
GAG
[ENA]
¡û
>W1910503217
FYCF01000030
Bacteroidota
Flavobacterium psychrophilum DK002 [FYCF]
45241
45324
+
Leu
GAG
[ENA]
¡û
>W1910503232
FYCG01000002
Bacteroidota
Flavobacterium psychrophilum FI070 [FYCG]
45042
45125
+
Leu
GAG
[ENA]
¡û
>W1910503290
FYCH01000033
Bacteroidota
Flavobacterium psychrophilum CH1895 [FYCH]
61181
61098
-
Leu
GAG
[ENA]
¡û
>W1910503314
FYCI01000021
Bacteroidota
Flavobacterium psychrophilum DK095 [FYCI]
83138
83055
-
Leu
GAG
[ENA]
¡û
>W1910503521
FYCM01000053
Bacteroidota
Flavobacterium psychrophilum FPC 831 [FYCM]
81
164
+
Leu
GAG
[ENA]
¡û
>W1910503569
FYCO01000029
Bacteroidota
Flavobacterium psychrophilum IT02 [FYCO]
47825
47908
+
Leu
GAG
[ENA]
¡û
>W1910503688
FYCS01000045
Bacteroidota
Flavobacterium psychrophilum IT09 [FYCS]
37736
37819
+
Leu
GAG
[ENA]
¡û
>W1910503722
FYCT01000057
Bacteroidota
Flavobacterium psychrophilum FI166 [FYCT]
61202
61119
-
Leu
GAG
[ENA]
¡û
>W1910503799
FYCW01000038
Bacteroidota
Flavobacterium psychrophilum LM-01-Fp [FYCW]
61184
61101
-
Leu
GAG
[ENA]
¡û
>W1910503835
FYCX01000051
Bacteroidota
Flavobacterium psychrophilum NO004 [FYCX]
5728
5645
-
Leu
GAG
[ENA]
¡û
>W1910503847
FYCY01000002
Bacteroidota
Flavobacterium psychrophilum NO014 [FYCY]
61180
61097
-
Leu
GAG
[ENA]
¡û
>W1910503915
FYCZ01000041
Bacteroidota
Flavobacterium psychrophilum LM-02-Fp [FYCZ]
61180
61097
-
Leu
GAG
[ENA]
¡û
>W1910503951
FYDA01000070
Bacteroidota
Flavobacterium psychrophilum NO042 [FYDA]
84043
83960
-
Leu
GAG
[ENA]
¡û
>W1910503959
FYDB01000010
Bacteroidota
Flavobacterium psychrophilum NO098 [FYDB]
20546
20463
-
Leu
GAG
[ENA]
¡û
>W1910503990
FYDC01000001
Bacteroidota
Flavobacterium psychrophilum NO083 [FYDC]
37736
37819
+
Leu
GAG
[ENA]
¡û
>W1910505695
FYEO01000268
Bacteroidota
Flavobacterium psychrophilum FPC 840 [FYEO]
81
164
+
Leu
GAG
[ENA]
¡û
>W1910576491
JSCD01000007
Bacteroidota
Flavobacterium psychrophilum 10 [JSCD]
47167
47250
+
Leu
GAG
[ENA]
¡û
>W1910576628
JSWL01000005
Bacteroidota
Flavobacterium psychrophilum IWL08 [JSWL]
157701
157618
-
Leu
GAG
[ENA]
¡û
>W1910809513
MUHE01000037
Bacteroidota
Flavobacterium psychrophilum DSM 3660 = ATCC 49418 [MUHE]
5356
5273
-
Leu
GAG
[ENA]
¡û
>W1810763346
QQBA01000001
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
32568
32651
+
Leu
GAG
[ENA]
¡û
>C151018503
CP007206
Bacteroidota
Flavobacterium psychrophilum FPG101 [CP007206]
2056449
2056532
+
Leu
GAG
[Ensembl]
¡û
>C151018574
CP007207
Bacteroidota
Flavobacterium psychrophilum FPG3 [CP007207]
1010327
1010244
-
Leu
GAG
[Ensembl]
¡û
>C151030339
CP007627
Bacteroidota
Flavobacterium psychrophilum CSF259-93 [CP007627]
2107984
2108067
+
Leu
GAG
[Ensembl]
¡û
>C151038968
CP008878
Bacteroidota
Flavobacterium psychrophilum V3-5 [CP008878]
1496887
1496970
+
Leu
GAG
[Ensembl]
¡û
>C151039004
CP008881
Bacteroidota
Flavobacterium psychrophilum V4-24 [CP008881]
1480758
1480841
+
Leu
GAG
[Ensembl]
¡û
>C151039041
CP008883
Bacteroidota
Flavobacterium psychrophilum v4-33 [CP008883]
1490155
1490238
+
Leu
GAG
[Ensembl]
¡û
>C151039533
CP008902
Bacteroidota
Flavobacterium psychrophilum 950106-1/1 [CP008902]
1482346
1482429
+
Leu
GAG
[Ensembl]
¡û
>C151065058
CP010274
Bacteroidota
Flavobacterium psychrophilum 5 [CP010274]
1627679
1627762
+
Leu
GAG
-
¡û
>C151065106
CP010276
Bacteroidota
Flavobacterium psychrophilum PG2 [CP010276]
1630120
1630203
+
Leu
GAG
-
¡û
>C151072406
CP010798
Bacteroidota
Flavobacterium psychrophilum [CP010798]
559193
559110
-
Leu
GAG
-
¡û
>W1511357159
JRWA01000007
Bacteroidota
Flavobacterium psychrophilum CSF-259-93 [JRWA]
325860
325943
+
Leu
GAG
[ENA]
¡û
>W1511357201
JRWB01000023
Bacteroidota
Flavobacterium psychrophilum CN [JRWB]
164641
164724
+
Leu
GAG
[ENA]
¡û
>W1511357272
JRWD01000023
Bacteroidota
Flavobacterium psychrophilum THC 02-90 [JRWD]
78055
77972
-
Leu
GAG
[ENA]
¡û
>W1511357319
JRWE01000023
Bacteroidota
Flavobacterium psychrophilum TN [JRWE]
78126
78043
-
Leu
GAG
[ENA]
¡û
>W1511357366
JRWF01000021
Bacteroidota
Flavobacterium psychrophilum TR [JRWF]
78119
78036
-
Leu
GAG
[ENA]
¡û
>C161024425
CP010275
Bacteroidota
Flavobacterium psychrophilum MH1 [CP010275]
1626439
1626522
+
Leu
GAG
-
¡û
>C161024473
CP010277
Bacteroidota
Flavobacterium psychrophilum VQ50 [CP010277]
1588081
1588164
+
Leu
GAG
-
¡û
>C161024521
CP010278
Bacteroidota
Flavobacterium psychrophilum 3 [CP010278]
1584890
1584973
+
Leu
GAG
-
¡û
>W1610062209
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
145
62
-
Leu
GAG
[ENA]
¡û
>W1610764402
LNNF01000191
Bacteroidota
Flavobacterium psychrophilum [LNNF]
45661
45744
+
Leu
GAG
[ENA]
¡û
>W1610772903
LNTP01000135
Bacteroidota
Flavobacterium psychrophilum [LNTP]
47184
47267
+
Leu
GAG
[ENA]
¡û
>W1610772948
LNTQ01000124
Bacteroidota
Flavobacterium psychrophilum [LNTQ]
5510
5427
-
Leu
GAG
[ENA]
¡û
>W1610895183
LRTL01000003
Bacteroidota
Flavobacterium psychrophilum [LRTL]
72413
72330
-
Leu
GAG
[ENA]
¡û
>W1710059750
BCNG01000107
Bacteroidota
Flavobacterium psychrophilum [BCNG]
145
62
-
Leu
GAG
[ENA]
¡û
>W1710507334
FMVE01000010
Bacteroidota
Flavobacterium psychrophilum DSM 3660 [FMVE]
82134
82051
-
Leu
GAG
[ENA]
¡û
>W1710555807
FOJT01000001
Bacteroidota
Flavobacterium swingsii [FOJT]
273197
273282
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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