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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83345 (69 seq.)
>W1710877132
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
583
669
+
Leu
TAA
[ENA]
¡û
>W1711116972
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
613
527
-
Leu
TAA
[ENA]
¡û
>W1711603281
MOLV01000034
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
402
316
-
Leu
TAA
[ENA]
¡û
>W1712017342
NESR01000043
Bacillota
Kurthia gibsonii [NESR]
512
426
-
Leu
TAA
[ENA]
¡û
>PL171001642
CP022237
Firmicutes
Exiguobacterium oxidotolerans N4-1P plasmid:unnamed1
128532
128618
+
Leu
TAA
[ENA]
¡û
>C171040533
CP015731
Bacillota
Exiguobacterium sp. U13-1 [CP015731]
514380
514466
+
Leu
TAA
-
¡û
>C171072108
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
87246
87332
+
Leu
TAA
-
¡û
>C171072114
CP018057
Bacillota
Exiguobacterium sp. ZWU0009 [CP018057]
92848
92934
+
Leu
TAA
-
¡û
>w003687
AADW02000030
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
19851
19763
-
Leu
TAA
[ENA]
¡û
>C08004787
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
87570
87656
+
Leu
TAA
[Ensembl]
¡û
>WENV170022761
BCQK01046195
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
385
299
-
Leu
TAA
[ENA]
¡û
>W141484777
JFYW01000006
Bacillota
Exiguobacterium sp. RIT341 [JFYW]
136
222
+
Leu
TAA
[ENA]
¡û
>W141701507
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1492318
1492404
+
Leu
TAA
[ENA]
¡û
>W141730946
JNIR01000001
Bacillota
Exiguobacterium acetylicum DSM 20416 [JNIR]
2806906
2806992
+
Leu
TAA
[ENA]
¡û
>W141730996
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1653115
1653201
+
Leu
TAA
[ENA]
¡û
>C141009919
CP006866
Bacillota
Exiguobacterium sp. MH3 [CP006866]
51719
51805
+
Leu
TAA
[Ensembl]
¡û
>W1911770711
QXJB01000022
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
238
324
+
Leu
TAA
[ENA]
¡û
>W1810760572
QPKF01000021
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
235
321
+
Leu
TAA
[ENA]
¡û
>W2010253472
CABJAC020000022
Bacillota
Bacillales bacterium [CABJAC]
504
418
-
Leu
TAA
[ENA]
¡û
>W2010308446
CABWKQ010000033
Bacillota
Exiguobacterium sp. 9Y [CABWKQ]
517
431
-
Leu
TAA
[ENA]
¡û
>W2011328011
QXJB01000022
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
238
324
+
Leu
TAA
[ENA]
¡û
>W2011995429
VEAY01000517
Bacillota
Exiguobacterium sp. ZWU0009 DE0309 [VEAY]
122
208
+
Leu
TAA
[ENA]
¡û
>W2110256092
JACSME010000029
Bacillota
Exiguobacterium sp. s104 [JACSME]
480
394
-
Leu
TAA
[ENA]
¡û
>W2110256159
JACSMF010000028
Bacillota
Exiguobacterium sp. s100 [JACSMF]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256226
JACSMG010000026
Bacillota
Exiguobacterium sp. ERU656 [JACSMG]
518
432
-
Leu
TAA
[ENA]
¡û
>W2110256291
JACSMH010000016
Bacillota
Exiguobacterium sp. s81 [JACSMH]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256358
JACSMI010000016
Bacillota
Exiguobacterium sp. s125 [JACSMI]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256425
JACSMJ010000016
Bacillota
Exiguobacterium sp. s105 [JACSMJ]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256492
JACSMK010000026
Bacillota
Exiguobacterium sp. s133 [JACSMK]
480
394
-
Leu
TAA
[ENA]
¡û
>W2110256558
JACSML010000019
Bacillota
Exiguobacterium sp. s102 [JACSML]
480
394
-
Leu
TAA
[ENA]
¡û
>W2110256625
JACSMM010000021
Bacillota
Exiguobacterium sp. s95 [JACSMM]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256692
JACSMN010000026
Bacillota
Exiguobacterium sp. S90 s90 [JACSMN]
480
394
-
Leu
TAA
[ENA]
¡û
>W2110256758
JACSMO010000026
Bacillota
Exiguobacterium sp. s127 [JACSMO]
480
394
-
Leu
TAA
[ENA]
¡û
>W2110256825
JACSMP010000025
Bacillota
Exiguobacterium sp. s80 [JACSMP]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110256892
JACSMQ010000021
Bacillota
Exiguobacterium sp. H66 [JACSMQ]
532
618
+
Leu
TAA
[ENA]
¡û
>W2110256957
JACSMR010000026
Bacillota
Exiguobacterium sp. s193 [JACSMR]
515
429
-
Leu
TAA
[ENA]
¡û
>W2110257022
JACSMS010000031
Bacillota
Exiguobacterium sp. s192 [JACSMS]
563
649
+
Leu
TAA
[ENA]
¡û
>W2110257088
JACSMT010000107
Bacillota
Exiguobacterium sp. s128 [JACSMT]
327
413
+
Leu
TAA
[ENA]
¡û
>W2110257155
JACSMU010000018
Bacillota
Exiguobacterium sp. s166 [JACSMU]
206
120
-
Leu
TAA
[ENA]
¡û
>W2110257221
JACSMV010000050
Bacillota
Exiguobacterium sp. s145 [JACSMV]
324
410
+
Leu
TAA
[ENA]
¡û
>W2110257287
JACSMW010000018
Bacillota
Exiguobacterium sp. s138 [JACSMW]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110257353
JACSMX010000013
Bacillota
Exiguobacterium sp. s143 [JACSMX]
324
410
+
Leu
TAA
[ENA]
¡û
>W2110257418
JACSMY010000014
Bacillota
Exiguobacterium sp. s46 [JACSMY]
472
386
-
Leu
TAA
[ENA]
¡û
>W2110257485
JACSMZ010000011
Bacillota
Exiguobacterium sp. s91 [JACSMZ]
473
387
-
Leu
TAA
[ENA]
¡û
>W2110257550
JACSNA010000012
Bacillota
Exiguobacterium sp. s39 [JACSNA]
473
387
-
Leu
TAA
[ENA]
¡û
>W2110257616
JACSNB010000012
Bacillota
Exiguobacterium sp. s78 [JACSNB]
473
387
-
Leu
TAA
[ENA]
¡û
>W2110257682
JACSNC010000010
Bacillota
Exiguobacterium sp. s191 [JACSNC]
512
426
-
Leu
TAA
[ENA]
¡û
>W2110257745
JACSND010000021
Bacillota
Exiguobacterium sp. s144 [JACSND]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110257813
JACSNE010000064
Bacillota
Exiguobacterium sp. s168 [JACSNE]
474
388
-
Leu
TAA
[ENA]
¡û
>W2110257880
JACSNF010000013
Bacillota
Exiguobacterium sp. s11 [JACSNF]
337
423
+
Leu
TAA
[ENA]
¡û
>W2110257947
JACSNG010000014
Bacillota
Exiguobacterium sp. E.VS.2 [JACSNG]
506
420
-
Leu
TAA
[ENA]
¡û
>W2110258010
JACSNH010000019
Bacillota
Exiguobacterium sp. s161 [JACSNH]
325
411
+
Leu
TAA
[ENA]
¡û
>W2110258076
JACSNI010000018
Bacillota
Exiguobacterium sp. s130 [JACSNI]
472
386
-
Leu
TAA
[ENA]
¡û
>W2110438859
JAEQBC010000114
Bacillota
Exiguobacterium sp. J14376 [JAEQBC]
135
221
+
Leu
TAA
[ENA]
¡û
>W2110619154
JAHLNR010000021
Bacillota
Weissella confusa N65 [JAHLNR]
4455
4369
-
Leu
TAA
[ENA]
¡û
>C201047067
CP030931
Bacillota
Exiguobacterium acetylicum AMCC 101217 [CP030931]
86818
86904
+
Leu
TAA
-
¡û
>C211094019
CP053557
Bacillota
Exiguobacterium sp. Helios [CP053557]
334488
334574
+
Leu
TAA
-
¡û
>C211340975
CP075897
Bacillota
Exiguobacterium acetylicum SI17 [CP075897]
86818
86904
+
Leu
TAA
-
¡û
>C211395294
CP082333
Bacillota
Exiguobacterium acetylicum EYLC1 [CP082333]
86827
86913
+
Leu
TAA
-
¡û
>C231172579
CP081878
Bacillota
Exiguobacterium acetylicum UTDF19-27C [CP081878]
86809
86895
+
Leu
TAA
-
¡û
>W2130022749
JADOYC010000014
Bacillota
Exiguobacterium sp. TBG-PICH-001 [JADOYC]
277
191
-
Leu
TAA
[ENA]
¡û
>W1511403819
JTLL01000036
Bacillota
Exiguobacterium sp. ZWU0009 [JTLL]
306
392
+
Leu
TAA
[ENA]
¡û
>W1511686109
LFQN01000049
Bacillota
Exiguobacterium acetylicum ZBG2 [LFQN]
404
318
-
Leu
TAA
[ENA]
¡û
>W1511699969
LGIW01000010
Bacillota
Exiguobacterium sp. BMC-KP [LGIW]
346
432
+
Leu
TAA
[ENA]
¡û
>C131001803
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
87501
87587
+
Leu
TAA
[Ensembl]
¡û
>W1610589711
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
402
316
-
Leu
TAA
[ENA]
¡û
>W1610739478
LMPV01000005
Bacillota
Exiguobacterium sp. Leaf196 [LMPV]
583
669
+
Leu
TAA
[ENA]
¡û
>W1610928331
LUCU01000005
Bacillota
Exiguobacterium sp. KKBO11 [LUCU]
613
527
-
Leu
TAA
[ENA]
¡û
>W1710708991
LDQW01000108
Bacillota
Exiguobacterium indicum [LDQW]
402
316
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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