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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83851 (14 seq.)
>C008056
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
832606
832692
+
Leu
CAG
[Ensembl]
¡û
>C008076
CP000527
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris DP4 [CP000527]
2897373
2897459
+
Leu
CAG
[Ensembl]
¡û
>C008157
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
2691224
2691138
-
Leu
CAG
[Ensembl]
¡û
>C008177
AE017285
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris str. Hildenborough [AE017285]
514333
514247
-
Leu
CAG
[Ensembl]
¡û
>WENV183710892
PDWI01055809
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
328
414
+
Leu
CAG
[ENA]
¢þ
>WENV183717957
PDWJ01002047
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
21468
21554
+
Leu
CAG
[ENA]
¢þ
>W09106221
AATW01000004
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
128992
128906
-
Leu
CAG
[ENA]
¡û
>W09106226
AATW01000005
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris subsp. vulgaris DP4 [AATW]
226600
226686
+
Leu
CAG
[ENA]
¡û
>W09134077
ACQX01000014
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
81076
80990
-
Leu
CAG
[ENA]
¡û
>W09134096
ACQX01000032
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [ACQX]
12873
12787
-
Leu
CAG
[ENA]
¡û
>C11107465
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
2694745
2694659
-
Leu
CAG
[Ensembl]
¡û
>C11107478
CP002297
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris RCH1 [CP002297]
518898
518812
-
Leu
CAG
[Ensembl]
¡û
>W1610046113
BBCC01000069
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
25658
25744
+
Leu
CAG
[ENA]
¡û
>W1710042909
BBCC01000069
Thermodesulfobacteriota
Desulfosarcina cetonica JCM 12296 [BBCC]
25658
25744
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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