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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83851 (9 seq.)
>W1710960631
LPBG01000047
Betaproteobacteria
Burkholderia ubonensis [LPBG]
324207
324293
+
Ser
GGA
[ENA]
¡û
>W1710960860
LPBJ01000047
Betaproteobacteria
Burkholderia ubonensis [LPBJ]
468224
468310
+
Ser
GGA
[ENA]
¡û
>W1710960947
LPBK01000018
Betaproteobacteria
Burkholderia ubonensis [LPBK]
464605
464691
+
Ser
GGA
[ENA]
¡û
>W1710968940
LPGQ01000069
Betaproteobacteria
Burkholderia ubonensis [LPGQ]
468224
468310
+
Ser
GGA
[ENA]
¡û
>WENV170378706
CETV01042598
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
62
148
+
Ser
GGA
[ENA]
¡û
>W1610816845
LPBG01000047
Betaproteobacteria
Burkholderia ubonensis [LPBG]
324207
324293
+
Ser
GGA
[ENA]
¡û
>W1610817074
LPBJ01000047
Betaproteobacteria
Burkholderia ubonensis [LPBJ]
468224
468310
+
Ser
GGA
[ENA]
¡û
>W1610817161
LPBK01000018
Betaproteobacteria
Burkholderia ubonensis [LPBK]
464605
464691
+
Ser
GGA
[ENA]
¡û
>W1610825154
LPGQ01000069
Betaproteobacteria
Burkholderia ubonensis [LPGQ]
468224
468310
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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