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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8452 (101 seq.)
>WENV180009898
FLSC01149301
[FLSC] metagenome; saliva
425
333
-
Ser
GCT
[ENA]
¡û
>WENV180223152
OBBF01027047
[OBBF] human gut metagenome; human gut
234
142
-
Ser
GCT
[ENA]
¡û
>WENV180544480
OCIQ01013611
[OCIQ] human gut metagenome; human gut
374
282
-
Ser
GCT
[ENA]
¡û
>WENV180633787
OCRA01063074
[OCRA] human gut metagenome; human gut
232
324
+
Ser
GCT
[ENA]
¡û
>WENV180705956
ODEJ01058725
[ODEJ] human metagenome; G_DNA_Tongue dorsum
185
277
+
Ser
GCT
[ENA]
¡û
>WENV180708132
ODFJ01000325
[ODFJ] human metagenome; G_DNA_Tongue dorsum
209
301
+
Ser
GCT
[ENA]
¡û
>WENV180720754
ODGJ01139402
[ODGJ] human metagenome; G_DNA_Tongue dorsum
298
206
-
Ser
GCT
[ENA]
¡û
>WENV180723992
ODGR01000007
[ODGR] human metagenome; G_DNA_Tongue dorsum
26971
26879
-
Ser
GCT
[ENA]
¡û
>WENV180724251
ODGR01000284
[ODGR] human metagenome; G_DNA_Tongue dorsum
93
1
-
Ser
GCT
[ENA]
¡û
>WENV180754195
ODHT01148635
[ODHT] human metagenome; G_DNA_Stool
26
118
+
Ser
GCT
[ENA]
¡û
>WENV180756992
ODHW01000005
[ODHW] human metagenome; G_DNA_Tongue dorsum
22081
21989
-
Ser
GCT
[ENA]
¡û
>WENV180764112
ODIA01018693
[ODIA] human metagenome; G_DNA_Tongue dorsum
811
903
+
Ser
GCT
[ENA]
¡û
>WENV180768084
ODIG01002291
[ODIG] human metagenome; G_DNA_Tongue dorsum
9901
9993
+
Ser
GCT
[ENA]
¡û
>WENV180769517
ODIG01084766
[ODIG] human metagenome; G_DNA_Tongue dorsum
453
361
-
Ser
GCT
[ENA]
¡û
>WENV180774682
ODIJ01050354
[ODIJ] human metagenome; G_DNA_Tongue dorsum
585
677
+
Ser
GCT
[ENA]
¡û
>WENV180776359
ODIK01034394
[ODIK] human metagenome; G_DNA_Tongue dorsum
669
577
-
Ser
GCT
[ENA]
¡û
>WENV180779973
ODIN01028936
[ODIN] human metagenome; G_DNA_Throat
540
632
+
Ser
GCT
[ENA]
¡û
>WENV180783791
ODIQ01027423
[ODIQ] human metagenome; G_DNA_Tongue dorsum
541
633
+
Ser
GCT
[ENA]
¡û
>WENV180790099
ODIT01003864
[ODIT] human metagenome; G_DNA_Tongue dorsum
4028
3936
-
Ser
GCT
[ENA]
¡û
>WENV180791917
ODIW01000003
[ODIW] human metagenome; G_DNA_Tongue dorsum
112362
112270
-
Ser
GCT
[ENA]
¡û
>WENV180795129
ODIZ01032820
[ODIZ] human metagenome; G_DNA_Tongue dorsum
297
205
-
Ser
GCT
[ENA]
¡û
>WENV180803079
ODJE01031297
[ODJE] human metagenome; G_DNA_Tongue dorsum
811
903
+
Ser
GCT
[ENA]
¡û
>WENV180806406
ODJH01017108
[ODJH] human metagenome; G_DNA_Tongue dorsum
28
120
+
Ser
GCT
[ENA]
¡û
>WENV180816738
ODJP01050788
[ODJP] human metagenome; G_DNA_Tongue dorsum
495
403
-
Ser
GCT
[ENA]
¡û
>WENV180820576
ODJR01012996
[ODJR] human metagenome; G_DNA_Tongue dorsum
495
403
-
Ser
GCT
[ENA]
¡û
>WENV180821581
ODJS01021569
[ODJS] human metagenome; G_DNA_Tongue dorsum
263
355
+
Ser
GCT
[ENA]
¡û
>WENV180831195
ODKB01055084
[ODKB] human metagenome; G_DNA_Tongue dorsum
357
265
-
Ser
GCT
[ENA]
¡û
>WENV180854165
ODKX01001089
[ODKX] human metagenome; G_DNA_Tongue dorsum
833
925
+
Ser
GCT
[ENA]
¡û
>WENV180856569
ODKZ01031518
[ODKZ] human metagenome; G_DNA_Tongue dorsum
231
139
-
Ser
GCT
[ENA]
¡û
>WENV180858683
ODLC01023149
[ODLC] human metagenome; G_DNA_Tongue dorsum
287
379
+
Ser
GCT
[ENA]
¡û
>WENV180862132
ODLE01036415
[ODLE] human metagenome; G_DNA_Tongue dorsum
101
9
-
Ser
GCT
[ENA]
¡û
>WENV180864491
ODLH01049764
[ODLH] human metagenome; G_DNA_Tongue dorsum
525
433
-
Ser
GCT
[ENA]
¡û
>WENV180866110
ODLJ01004729
[ODLJ] human metagenome; G_DNA_Tongue dorsum
561
653
+
Ser
GCT
[ENA]
¡û
>WENV180875114
ODLQ01032759
[ODLQ] human metagenome; G_DNA_Tongue dorsum
265
357
+
Ser
GCT
[ENA]
¡û
>WENV180880654
ODLZ01040741
[ODLZ] human metagenome; G_DNA_Tongue dorsum
808
900
+
Ser
GCT
[ENA]
¡û
>WENV180882413
ODMC01000038
[ODMC] human metagenome; G_DNA_Tongue dorsum
116767
116675
-
Ser
GCT
[ENA]
¡û
>WENV180884026
ODMC01032203
[ODMC] human metagenome; G_DNA_Tongue dorsum
811
903
+
Ser
GCT
[ENA]
¡û
>WENV180890973
ODMO01030816
[ODMO] human metagenome; G_DNA_Tongue dorsum
72
164
+
Ser
GCT
[ENA]
¡û
>WENV180895943
ODNI01000002
[ODNI] human metagenome; G_DNA_Tongue dorsum
495
403
-
Ser
GCT
[ENA]
¡û
>WENV180900969
ODOJ01019845
[ODOJ] human metagenome; G_DNA_Tongue dorsum
811
903
+
Ser
GCT
[ENA]
¡û
>WENV180901605
ODOK01000803
[ODOK] human metagenome; G_DNA_Tongue dorsum
799
891
+
Ser
GCT
[ENA]
¡û
>WENV180920102
ODTH01001394
[ODTH] human metagenome; G_DNA_Tongue dorsum
562
654
+
Ser
GCT
[ENA]
¡û
>WENV180929942
ODTN01027562
[ODTN] human metagenome; G_DNA_Tongue dorsum
245
153
-
Ser
GCT
[ENA]
¡û
>WENV180930827
ODTP01000432
[ODTP] human metagenome; G_DNA_Tongue dorsum
1799
1707
-
Ser
GCT
[ENA]
¡û
>WENV180932273
ODTP01038495
[ODTP] human metagenome; G_DNA_Tongue dorsum
557
649
+
Ser
GCT
[ENA]
¡û
>WENV180949069
ODUG01007597
[ODUG] human metagenome; G_DNA_Tongue dorsum
737
829
+
Ser
GCT
[ENA]
¡û
>WENV180949535
ODUG01020485
[ODUG] human metagenome; G_DNA_Tongue dorsum
692
600
-
Ser
GCT
[ENA]
¡û
>WENV180953314
ODUI01019993
[ODUI] human metagenome; G_DNA_Tongue dorsum
828
736
-
Ser
GCT
[ENA]
¡û
>WENV180958971
ODUM01000008
[ODUM] human metagenome; G_DNA_Tongue dorsum
29371
29463
+
Ser
GCT
[ENA]
¡û
>WENV180960060
ODUM01008660
[ODUM] human metagenome; G_DNA_Tongue dorsum
553
645
+
Ser
GCT
[ENA]
¡û
>WENV180967821
ODUT01003808
[ODUT] human metagenome; G_DNA_Tongue dorsum
5800
5892
+
Ser
GCT
[ENA]
¡û
>WENV180985863
ODVJ01021464
[ODVJ] human metagenome; G_DNA_Tongue dorsum
917
1009
+
Ser
GCT
[ENA]
¡û
>WENV180990216
ODVN01000607
[ODVN] human metagenome; G_DNA_Tongue dorsum
29437
29529
+
Ser
GCT
[ENA]
¡û
>WENV180991173
ODVN01023944
[ODVN] human metagenome; G_DNA_Tongue dorsum
550
642
+
Ser
GCT
[ENA]
¡û
>WENV181013074
ODWN01000003
[ODWN] human metagenome; G_DNA_Tongue dorsum
257453
257545
+
Ser
GCT
[ENA]
¡û
>WENV181016438
ODWR01001081
[ODWR] human metagenome; G_DNA_Tongue dorsum
737
829
+
Ser
GCT
[ENA]
¡û
>WENV181021935
ODWV01082749
[ODWV] human metagenome; G_DNA_Tongue dorsum
310
218
-
Ser
GCT
[ENA]
¡û
>WENV181033944
ODXN01041659
[ODXN] human metagenome; G_DNA_Tongue dorsum
93
1
-
Ser
GCT
[ENA]
¡û
>WENV181039492
ODXQ01025179
[ODXQ] human metagenome; G_DNA_Tongue dorsum
900
992
+
Ser
GCT
[ENA]
¡û
>WENV181040576
ODXS01000227
[ODXS] human metagenome; G_DNA_Tongue dorsum
33477
33385
-
Ser
GCT
[ENA]
¡û
>WENV181046052
ODXW01005609
[ODXW] human metagenome; G_DNA_Tongue dorsum
3682
3774
+
Ser
GCT
[ENA]
¡û
>WENV181057278
ODYL01000018
[ODYL] human metagenome; G_DNA_Tongue dorsum
14638
14546
-
Ser
GCT
[ENA]
¡û
>WENV181064932
ODYP01158300
[ODYP] human metagenome; G_DNA_Supragingival plaque
277
185
-
Ser
GCT
[ENA]
¡û
>WENV181068499
ODZZ01000173
[ODZZ] human metagenome; G_DNA_Tongue dorsum
24455
24363
-
Ser
GCT
[ENA]
¡û
>WENV181073816
OEAO01001225
[OEAO] human metagenome; G_DNA_Tongue dorsum
17430
17338
-
Ser
GCT
[ENA]
¡û
>WENV181075104
OEAO01069387
[OEAO] human metagenome; G_DNA_Tongue dorsum
269
177
-
Ser
GCT
[ENA]
¡û
>WENV181085958
OEAY01000019
[OEAY] human metagenome; G_DNA_Tongue dorsum
168817
168725
-
Ser
GCT
[ENA]
¡û
>WENV181094392
OEBY01000128
[OEBY] human metagenome; G_DNA_Tongue dorsum
46742
46834
+
Ser
GCT
[ENA]
¡û
>WENV181096914
OECA01000898
[OECA] human metagenome; G_DNA_Tongue dorsum
14606
14514
-
Ser
GCT
[ENA]
¡û
>WENV181101652
OECT01000127
[OECT] human metagenome; G_DNA_Tongue dorsum
561
653
+
Ser
GCT
[ENA]
¡û
>WENV181102573
OECT01005419
[OECT] human metagenome; G_DNA_Tongue dorsum
383
291
-
Ser
GCT
[ENA]
¡û
>WENV181105064
OEED01000884
[OEED] human metagenome; G_DNA_Tongue dorsum
2530
2438
-
Ser
GCT
[ENA]
¡û
>WENV181111962
OEEL01000049
[OEEL] human metagenome; G_DNA_Tongue dorsum
23983
24075
+
Ser
GCT
[ENA]
¡û
>WENV181112735
OEEL01002626
[OEEL] human metagenome; G_DNA_Tongue dorsum
4531
4623
+
Ser
GCT
[ENA]
¡û
>WENV181115500
OEEO01111678
[OEEO] human metagenome; G_DNA_Supragingival plaque
247
155
-
Ser
GCT
[ENA]
¡û
>WENV181130834
OEFY01096351
[OEFY] human metagenome; G_DNA_Throat
133
41
-
Ser
GCT
[ENA]
¡û
>WENV181140318
OEGN01104889
[OEGN] human metagenome; G_DNA_Tongue dorsum
2
94
+
Ser
GCT
[ENA]
¡û
>WENV181141829
OEGT01026358
[OEGT] human metagenome; G_DNA_Throat
179
271
+
Ser
GCT
[ENA]
¡û
>WENV181151583
OEHW01079561
[OEHW] human metagenome; G_DNA_Tongue dorsum
209
301
+
Ser
GCT
[ENA]
¡û
>WENV181157694
OEIG01021341
[OEIG] human metagenome; G_DNA_Hard palate
202
110
-
Ser
GCT
[ENA]
¡û
>W141291736
JATQ01000003
Bacillota
[Eubacterium] sulci ATCC 35585 [JATQ]
260818
260910
+
Ser
GCT
[ENA]
¡û
>WENV183256401
OLRK01027457
[OLRK] human gut metagenome; faeces
214
306
+
Ser
GCT
[ENA]
¡û
>WENV183286793
OLSE01062923
[OLSE] human gut metagenome; faeces
221
313
+
Ser
GCT
[ENA]
¡û
>WENV183655905
OQWE01001269
[OQWE] human gut metagenome; human gut
7776
7868
+
Ser
GCT
[ENA]
¡û
>WENV183704395
PDWI01000200
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29063
29155
+
Ser
GCT
[ENA]
¡û
>WENV183707282
PDWI01007723
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9586
9678
+
Ser
GCT
[ENA]
¡û
>WENV170685574
LFRM01098648
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12151
12059
-
Ser
GCT
[ENA]
¡û
>C181147976
CP027228
Bacillota
Mogibacterium diversum CCUG 47132 [CP027228]
633602
633510
-
Ser
GCT
-
¡û
>W1810797815
QRMS01000002
Bacillota
Emergencia timonensis AM07-24 [QRMS]
566624
566532
-
Ser
GCT
[ENA]
¡û
>C151090365
CP012068
Bacillota
Eubacterium sulci ATCC 35585 [CP012068]
833192
833284
+
Ser
GCT
-
¡û
>W2010250040
CABIXY020000002
Bacillota
Eubacteriaceae bacterium [CABIXY]
464484
464576
+
Ser
GCT
[ENA]
¡û
>W2010275622
CABKWE020000009
Bacillota
Emergencia timonensis [CABKWE]
1956000
1955908
-
Ser
GCT
[ENA]
¡û
>W2011316995
QWEJ01000010
Bacillota
Emergencia sp. 1XD21-50 [QWEJ]
50600
50692
+
Ser
GCT
[ENA]
¡û
>W2011823176
UGGN01000002
Bacillota
[Eubacterium] infirmum NCTC12940 [UGGN]
261467
261559
+
Ser
GCT
[ENA]
¡û
>W2110730223
JAJCMY010000002
Bacillota
Emergencia timonensis DFI.3.26 [JAJCMY]
283111
283019
-
Ser
GCT
[ENA]
¡û
>C231016043
AP025567
Bacillota
Emergencia timonensis CE91-St48 [AP025567]
1839802
1839894
+
Ser
GCT
-
¡û
>C231016094
AP025568
Bacillota
Emergencia timonensis CE91-St49 [AP025568]
1839793
1839885
+
Ser
GCT
-
¡û
>C231378392
CP097093
Bacillota
Mogibacterium diversum [CP097093]
898524
898432
-
Ser
GCT
-
¡û
>W121021708
AGWI01000014
Bacillota
[Eubacterium] infirmum F0142 [AGWI]
60662
60754
+
Ser
GCT
[ENA]
¡û
>W1610501842
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1956000
1955908
-
Ser
GCT
[ENA]
¡û
>W1710495312
FLKM01000009
Bacillota
Emergencia timonensis SN18 [FLKM]
1956000
1955908
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK